| ²é¿´: 682 | »Ø¸´: 1 | |||
zongzhiyouÒø³æ (³õÈëÎÄ̳)
|
[ÇóÖú]
Çó½ÌNAMD°²×°µÄÎÊÌâ
|
|
¸÷λ´óÏÀ£¬Çë½ÌÒ»¸ö±È½ÏÈõÈõµÄÎÊÌ⣺ ¹ØÓÚNAMDÈí¼þµÄ°²×°£¬ÔÚ¹ÙÍøÉÏÕÒµ½NAMDÏÂÔØÍøÒ³ÖÐÁбíÈçÏ ÔÚVersion 2.9 (2012-04-30) PlatformsÖÐÓÐÒÔÏÂÑ¡Ï Linux-x86 (32-bit Intel/AMD with ethernet) Linux-x86-TCP (TCP may be better on gigabit) Linux-x86_64-multicore (64-bit Intel/AMD single node) Linux-x86_64 (64-bit Intel/AMD with ethernet) Linux-x86_64-TCP (TCP may be better on gigabit) Linux-x86_64-ibverbs (InfiniBand via OpenFabrics OFED, no MPI needed) Linux-x86_64-ibverbs-smp (InfiniBand plus shared memory, no MPI needed) Linux-x86_64-multicore-CUDA (NVIDIA CUDA acceleration) Linux-x86_64-ibverbs-smp-CUDA (NVIDIA CUDA with InfiniBand) MacOSX-x86 (Mac OS X for Intel processors, fails on 10.7 "Lion" ![]() MacOSX-x86_64 (Mac OS X for 64-bit Intel processors) Solaris-x86_64 Win32 (Windows XP, etc.) Win64-MPI (Windows HPC Server) Source Code ĿǰÎÒµÄÊÇXP 32bit Ñ¡ÔñWin32 (Windows XP, etc.)ÏÂÔØ£¬µã»÷ÁËnamd2.exeÌáʾÈ總¼þÖеĴíÎó£¬ÔÚÂÛ̳Àï¿´µ½ÊÇȱÉÙconfiÎļþ£¬ÄÇÕâ¸öÎļþÄÄÀïȥŪ£¬Çó½â´ð ![]() [ Last edited by zongzhiyou on 2013-1-7 at 12:42 ] |
» ÊÕ¼±¾ÌûµÄÌÔÌûר¼ÍƼö
NAMD |
» ²ÂÄãϲ»¶
²ÎÓëÏÞÏî
ÒѾÓÐ3È˻ظ´
¼ÙÈçÄãµÄÑо¿ÉúÌá³ö²»ºÏÀíÒªÇó
ÒѾÓÐ7È˻ظ´
ʵÑéÊÒ½Óµ¥×Ó
ÒѾÓÐ4È˻ظ´
È«ÈÕÖÆ£¨¶¨Ïò£©²©Ê¿
ÒѾÓÐ4È˻ظ´
¶ÔÂȱ½ÅðËá´¿»¯
ÒѾÓÐ3È˻ظ´
ÇóÖú:ÎÒÈýÔÂÖÐÏÂÑ®³öÕ¾£¬Çà»ùÒÀÍе¥Î»Ôõô°ì£¿
ÒѾÓÐ12È˻ظ´
²»×ÔÐŵÄÎÒ
ÒѾÓÐ12È˻ظ´
Ëù¸Ð
ÒѾÓÐ4È˻ظ´
Òª²»Òª´ÇÖ°¶Á²©£¿
ÒѾÓÐ7È˻ظ´
±±ºË¼ÓÃ
ÒѾÓÐ3È˻ظ´
» ±¾Ö÷ÌâÏà¹Ø¼ÛÖµÌùÍÆ¼ö£¬¶ÔÄúͬÑùÓаïÖú:
ÇóÖú¹ØÓÚnamdÖÐÄÜÁ¿ÓÅ»¯µÄÒ»µãÒÉÎÊ
ÒѾÓÐ6È˻ظ´
ÇóÖúnamdµÄÅäÖÃÎļþµÄÐ޸ģ¬Ö÷ÒªÊÇÈçºÎÌí¼ÓÔ¼Êø
ÒѾÓÐ5È˻ظ´
Çó½Ì£¬°²×°¹ý³Ì³öÏÖÅäÖÃÎļþ´íÎó
ÒѾÓÐ2È˻ظ´
Çë½ÌGROMACS°²×°
ÒѾÓÐ8È˻ظ´
±¾¿ÆÐÂÊÖ£¬NAMD ×ö·Ö×ÓÄ£Ä⣬ѧϰÊÜ×裬Çó½Ì~~
ÒѾÓÐ3È˻ظ´
°²×°aspen¹ý³ÌÖÐÓöµ½ÎÊÌâ Çó½Ì¸ßÊÖ
ÒѾÓÐ8È˻ظ´
[ÐÂÊÖÇó½Ì]°²×°Gromacsºó£¬²é¿´pdb2gmxÃüÁÏÔʾÎÞ´ËÃüÁî
ÒѾÓÐ9È˻ظ´
¡¾ÇóÖú¡¿ÔÚNAMDÔËÐÐÖÐʹÓÃCHARMM¸ñʽµÄÁ¦³¡Îļþ£¬µ«Á¦³¡²ÎÊýÀ´×ÔAMBERÁ¦³¡£¬»á³öÎÊÌâÂ
ÒѾÓÐ4È˻ظ´
Çó½Ì£¬ÎÒ°²×°µÄmerck14th£¬Ç°ÃæÊ¹Óü¸Ììok£¬µ«ÊÇÏÖÔÚ²»ÐÐÁË
ÒѾÓÐ7È˻ظ´
¡¾ÇóÖú¡¿×öNAMDµÄ1K4C.pdbʱºò³öÏֵĴíÎó
ÒѾÓÐ30È˻ظ´
¡¾ÇóÖú¡¿NAMD: water boxʱ£¬Á¢·½Ë®ÌåµÄ±ß½ç¸ÃÔõÑùÈ·¶¨£¿ÏÈлÁË
ÒѾÓÐ4È˻ظ´
¡¾ÇóÖú¡¿NAMDÖеÄsegmentÊÇʲôÒâ˼£¿
ÒѾÓÐ3È˻ظ´
¡¾ÇóÖú¡¿LAMMPS¡¢NAMDºÍCHARMMË×îÊʺÏÉúÎï´ó·Ö×ÓÄ£Ä⣿
ÒѾÓÐ8È˻ظ´
¡¾ÇóÖú¡¿GromacsºÍNAMD±ÈAmber¿ìºÜ¶àÂð£¿ÈçºÎÑ¡Ôñ£¿
ÒѾÓÐ7È˻ظ´
¡¾ÇóÖú¡¿´òËã´ÓamberѧÆð
ÒѾÓÐ16È˻ظ´
¡¾ÇóÖú¡¿namd ³ö´íPeriodic cell has become too small for original patch grid!
ÒѾÓÐ10È˻ظ´
¡¾ÇóÖú¡¿Linux ÏÂNAMDµÄµ¥»ú°æÔõô°²×°£¿
ÒѾÓÐ6È˻ظ´
¡¾ÇóÖú¡¿NAMDºÍGromacsÄĸö¼òµ¥£¿
ÒѾÓÐ5È˻ظ´
¡¾ÇóÖú¡¿namdºÍvmd¾ÍÖ»ÄÜʶ±ð.pdb.psf.coor.velµÈÎļþÂð
ÒѾÓÐ6È˻ظ´
¡¾ÇóÖú¡¿namd¡¢vmdÍÆ¼ö¸öѧϰÐ޸ĺͱàд½Å±¾ÍøÕ¾ºÍµØ·½°É
ÒѾÓÐ3È˻ظ´
¡¾ÇóÖú¡¿namd tutorialÓöµ½ÎÊÌâ
ÒѾÓÐ10È˻ظ´
¡¾ÇóÖú¡¿NAMD°²×°ÎÊÌâ
ÒѾÓÐ19È˻ظ´

fhh2626
ľ³æ (ÕýʽдÊÖ)
- Ó¦Öú: 135 (¸ßÖÐÉú)
- ½ð±Ò: 2354.1
- ºì»¨: 7
- Ìû×Ó: 344
- ÔÚÏß: 139Сʱ
- ³æºÅ: 1475956
- ×¢²á: 2011-11-04
- ÐÔ±ð: GG
- רҵ: ÀíÂۺͼÆË㻯ѧ
¡¾´ð°¸¡¿Ó¦Öú»ØÌû
¡ï ¡ï
¸Ðл²ÎÓ룬ӦÖúÖ¸Êý +1
jiaoyixiong: ½ð±Ò+2, ¹ÄÀø½»Á÷ 2013-01-07 20:20:06
¸Ðл²ÎÓ룬ӦÖúÖ¸Êý +1
jiaoyixiong: ½ð±Ò+2, ¹ÄÀø½»Á÷ 2013-01-07 20:20:06
|
±¾À´NAMD¾ÍûÓÐͼÐνçÃæµÄ£¬²»Äܵ㿪 CONFÎļþÊÇÒª×Ô¼ºÐ´µÄ£¬ÀïÃæ°üº¬ÁËÄãÒª¼ÆËãµÄÌåϵµÄ¸÷ÖÖÐÅÏ¢ дÍêÁËÖ®ºóÓÃnamd2 **.conf > **.logÕâÀàËÆµÄÃüÁîÀ´½øÐмÆËã ¹ØÓÚÕâ¸öÎļþÔõôдÄã¿ÉÒÔ¿´Ò»ÏÂÕâ¸öÌù http://muchong.com/html/201108/3516164.html |
2Â¥2013-01-07 13:53:57














»Ø¸´´ËÂ¥