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amber²¢Ðа²×°²âÊÔ³ö´í£¬Ç°Ãæ´®Ðа²×°·Ç³£Ë³Àû£¬make parallelÒ²ÏÔʾ²¢Ðа²×°Íê³É£¬µ«ÊDz¢ÐвâÊÔʼÖÕͨ²»¹ý make test.parallel.MM < /dev/null£º export TESTsander=/share/apps/amber10/exe/sander.MPI; make test.sander.BASIC make[1]: Entering directory `/share/apps/amber10/test' cd cytosine && ./Run.cytosine [cluster:07680] *** Process received signal *** [cluster:07680] Signal: Segmentation fault (11) [cluster:07680] Signal code: Address not mapped (1) [cluster:07680] Failing at address: 0x50 [cluster:07680] [ 0] /lib64/libpthread.so.0 [0x357dc0e7c0] [cluster:07680] [ 1] /opt/openmpi/lib/libopen-rte.so.0(orte_util_encode_pidmap+0xdb) [0x2b4d87bb25eb] [cluster:07680] [ 2] /opt/openmpi/lib/libopen-rte.so.0(orte_odls_base_default_get_add_procs_data+0x598) [0x2b4d87bc91b8] [cluster:07680] [ 3] /opt/openmpi/lib/libopen-rte.so.0(orte_plm_base_launch_apps+0x10b) [0x2b4d87bd82bb] [cluster:07680] [ 4] /opt/openmpi/lib/libopen-rte.so.0 [0x2b4d87bdc9d4] [cluster:07680] [ 5] mpirun [0x403246] [cluster:07680] [ 6] mpirun [0x402923] [cluster:07680] [ 7] /lib64/libc.so.6(__libc_start_main+0xf4) [0x357d01d994] [cluster:07680] [ 8] mpirun [0x402859] [cluster:07680] *** End of error message *** Segmentation fault ./Run.cytosine: Program error make[1]: *** [test.sander.BASIC] Error 1 make[1]: Leaving directory `/share/apps/amber10/test' make: *** [test.sander.BASIC.MPI] Error 2 ºÃÐÄÈË˵¿ÉÄÜÊÇopenmpiµÄ°æ±¾ÎÊÌ⣬ȻºóÎÒ¾ÍÊÔÁË5¸ö°æ±¾£¬Ã»ÓÐÒ»¸ö²âÊÔͨ¹ýµÄ£¬µ±»»µ½openmpi-1.2.9£¬Ë÷ÐÔmake parallel¶¼¹ý²»È¥ÁË£¬ÇëÎʸÃÔõô°ì°¡£¿£¿£¿£¿£¿ »¶Ó¸÷λ·¢±íÒâ¼û£¬²»Ê¤¸Ð¼¤£¡Ï£ÍûÕâ¸öÌû×Ó²»ÒªÓÖÊÇʯ³Á´óº£¡« |
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