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liangjun44

ÖÁ×ðľ³æ (ÖøÃûдÊÖ)

[ÇóÖú] gromacs°²×°³ö´íÇóÖú

´ó¼ÒºÃ£¬Çë½Ìһϣ¬°²×°gromacsʱ£¬½øÐе½make½×¶Î£¬³öÏÖÁËÒÔϵĴíÎó£¬Ó¦¸ÃÔõÑù½â¾öÄØ£¿Ð»Ð»~

numa_malloc.c:117: error: parse error before "Processor"
numa_malloc.c:118: error: parse error before "ProcNumber"
numa_malloc.c: In function `InitNumaHeapSupport':
numa_malloc.c:222: warning: dereferencing type-punned pointer will break strict-aliasing rules
numa_malloc.c: In function `ReturnHeapHandle':
numa_malloc.c:246: error: `PROCESSOR_NUMBER' undeclared (first use in this function)
numa_malloc.c:246: error: (Each undeclared identifier is reported only once
numa_malloc.c:246: error: for each function it appears in.)
numa_malloc.c:246: error: parse error before "CurrentProcessorNumber"
numa_malloc.c:285: error: `CurrentProcessorNumber' undeclared (first use in this function)
numa_malloc.c:324: warning: implicit declaration of function `HeapSetInformation'
Makefile:332: recipe for target `numa_malloc.lo' failed
make[4]: *** [numa_malloc.lo] Error 1
make[4]: À뿪Ŀ¼¡°/home/Administrator/gromacs-4.5.5/src/gmxlib/thread_mpi¡±
Makefile:599: recipe for target `all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: À뿪Ŀ¼¡°/home/Administrator/gromacs-4.5.5/src/gmxlib¡±
Makefile:302: recipe for target `all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: À뿪Ŀ¼¡°/home/Administrator/gromacs-4.5.5/src¡±
Makefile:238: recipe for target `all' failed
make[1]: *** [all] Error 2
make[1]: À뿪Ŀ¼¡°/home/Administrator/gromacs-4.5.5/src¡±
Makefile:347: recipe for target `all-recursive' failed
make: *** [all-recursive] Error 1
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shengxiang

ľ³æ (ÖøÃûдÊÖ)

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jiaoyixiong: ½ð±Ò+1, ¹ÄÀø½»Á÷ 2013-01-08 09:04:01
²»ÖªµÀÄã֮ǰµÄfftwºÍlamÊÇ·ñÒѾ­Õý³£°²×°£¿
2Â¥2013-01-07 21:51:04
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

liangjun44

ÖÁ×ðľ³æ (ÖøÃûдÊÖ)

ÒýÓûØÌû:
2Â¥: Originally posted by shengxiang at 2013-01-07 21:51:04
²»ÖªµÀÄã֮ǰµÄfftwºÍlamÊÇ·ñÒѾ­Õý³£°²×°£¿

lam×°²»ÁË£¬Ìáʾ
compiling ROMIO in directory adio/ad_ufs
make[4]: ½øÈëĿ¼¡°/home/Administrator/lam-7.1.3/romio/adio/ad_ufs¡±
gcc -O3 -DLAM_BUILDING=1 -O3   -DHAVE_ROMIOCONF_H -I/home/Administrator/lam-7.1.3/share/include -I/home/Administrator/lam-7.1.3/share/include -I/home/Administrator/lam-7.1.3/romio/adio/ad_ufs/../include -I../include -c ad_ufs_close.c
In file included from ad_ufs_close.c:9:
ad_ufs.h:21:17: aio.h: No such file or directory
Makefile:22: recipe for target `ad_ufs_close.o' failed
make[4]: *** [ad_ufs_close.o] Error 1
make[4]: À뿪Ŀ¼¡°/home/Administrator/lam-7.1.3/romio/adio/ad_ufs¡±
Make failed in directory adio/ad_ufs
Makefile:85: recipe for target `mpiolib' failed
make[3]: *** [mpiolib] Error 1
make[3]: À뿪Ŀ¼¡°/home/Administrator/lam-7.1.3/romio¡±
Makefile:30: recipe for target `mpio' failed
make[2]: *** [mpio] Error 2
make[2]: À뿪Ŀ¼¡°/home/Administrator/lam-7.1.3/romio¡±
Makefile:896: recipe for target `romio-all' failed
make[1]: *** [romio-all] Error 2
make[1]: À뿪Ŀ¼¡°/home/Administrator/lam-7.1.3¡±
Makefile:446: recipe for target `all-recursive' failed
make: *** [all-recursive] Error 1
Ö®ºóÎÒ¾Íû¹ÜÁË£¬ÔÚ±àÒëµÄʱºò²»¼Ó--enable-mpi£¬×°fftwÊdzɹ¦µÄ~
3Â¥2013-01-08 08:51:45
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

doughtiness

гæ (СÓÐÃûÆø)

ÄãÊÇÔÚʲôϵͳϰ²×°µÄGMX°¡£¿ÎÒ×î½üÒ²ÊÇÔÚ°²×°GMX,ÔÚubuntuϵͳϰ²×°µÄ¡£
Äã¿ÉÒÔÊÔÊÔÈçÏÂÃüÁ
GMX²¢Ðа²×°ÐèÒª3¸ö¶«Î÷£¬FFTW,CMAKEºÍGROMACS×ÔÉí°²×°Á÷³Ì£º
FFTW:
./configure --enable-threads --enable-float
make
make install
Cmake:
./configure
make
sudo make install
Gromacs:
./configure
make
make install
Íê³ÉºóÔÙ¸÷×ÔÉèÖû·¾³±äÁ¿¾Í¿ÉÒÔÁË
4Â¥2013-01-08 20:00:13
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

liangjun44

ÖÁ×ðľ³æ (ÖøÃûдÊÖ)

ÒýÓûØÌû:
4Â¥: Originally posted by doughtiness at 2013-01-08 20:00:13
ÄãÊÇÔÚʲôϵͳϰ²×°µÄGMX°¡£¿ÎÒ×î½üÒ²ÊÇÔÚ°²×°GMX,ÔÚubuntuϵͳϰ²×°µÄ¡£
Äã¿ÉÒÔÊÔÊÔÈçÏÂÃüÁ
GMX²¢Ðа²×°ÐèÒª3¸ö¶«Î÷£¬FFTW,CMAKEºÍGROMACS×ÔÉí°²×°Á÷³Ì£º
FFTW:
./configure --enable-threads --enable- ...

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ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû
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