24小时热门版块排行榜    

查看: 1885  |  回复: 4
当前只显示满足指定条件的回帖,点击这里查看本话题的所有回帖

liangjun44

至尊木虫 (著名写手)

[求助] gromacs安装出错求助

大家好,请教一下,安装gromacs时,进行到make阶段,出现了以下的错误,应该怎样解决呢?谢谢~

numa_malloc.c:117: error: parse error before "Processor"
numa_malloc.c:118: error: parse error before "ProcNumber"
numa_malloc.c: In function `InitNumaHeapSupport':
numa_malloc.c:222: warning: dereferencing type-punned pointer will break strict-aliasing rules
numa_malloc.c: In function `ReturnHeapHandle':
numa_malloc.c:246: error: `PROCESSOR_NUMBER' undeclared (first use in this function)
numa_malloc.c:246: error: (Each undeclared identifier is reported only once
numa_malloc.c:246: error: for each function it appears in.)
numa_malloc.c:246: error: parse error before "CurrentProcessorNumber"
numa_malloc.c:285: error: `CurrentProcessorNumber' undeclared (first use in this function)
numa_malloc.c:324: warning: implicit declaration of function `HeapSetInformation'
Makefile:332: recipe for target `numa_malloc.lo' failed
make[4]: *** [numa_malloc.lo] Error 1
make[4]: 离开目录“/home/Administrator/gromacs-4.5.5/src/gmxlib/thread_mpi”
Makefile:599: recipe for target `all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: 离开目录“/home/Administrator/gromacs-4.5.5/src/gmxlib”
Makefile:302: recipe for target `all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: 离开目录“/home/Administrator/gromacs-4.5.5/src”
Makefile:238: recipe for target `all' failed
make[1]: *** [all] Error 2
make[1]: 离开目录“/home/Administrator/gromacs-4.5.5/src”
Makefile:347: recipe for target `all-recursive' failed
make: *** [all-recursive] Error 1
回复此楼

» 猜你喜欢

» 本主题相关价值贴推荐,对您同样有帮助:

已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

liangjun44

至尊木虫 (著名写手)

引用回帖:
2楼: Originally posted by shengxiang at 2013-01-07 21:51:04
不知道你之前的fftw和lam是否已经正常安装?

lam装不了,提示
compiling ROMIO in directory adio/ad_ufs
make[4]: 进入目录“/home/Administrator/lam-7.1.3/romio/adio/ad_ufs”
gcc -O3 -DLAM_BUILDING=1 -O3   -DHAVE_ROMIOCONF_H -I/home/Administrator/lam-7.1.3/share/include -I/home/Administrator/lam-7.1.3/share/include -I/home/Administrator/lam-7.1.3/romio/adio/ad_ufs/../include -I../include -c ad_ufs_close.c
In file included from ad_ufs_close.c:9:
ad_ufs.h:21:17: aio.h: No such file or directory
Makefile:22: recipe for target `ad_ufs_close.o' failed
make[4]: *** [ad_ufs_close.o] Error 1
make[4]: 离开目录“/home/Administrator/lam-7.1.3/romio/adio/ad_ufs”
Make failed in directory adio/ad_ufs
Makefile:85: recipe for target `mpiolib' failed
make[3]: *** [mpiolib] Error 1
make[3]: 离开目录“/home/Administrator/lam-7.1.3/romio”
Makefile:30: recipe for target `mpio' failed
make[2]: *** [mpio] Error 2
make[2]: 离开目录“/home/Administrator/lam-7.1.3/romio”
Makefile:896: recipe for target `romio-all' failed
make[1]: *** [romio-all] Error 2
make[1]: 离开目录“/home/Administrator/lam-7.1.3”
Makefile:446: recipe for target `all-recursive' failed
make: *** [all-recursive] Error 1
之后我就没管了,在编译的时候不加--enable-mpi,装fftw是成功的~
3楼2013-01-08 08:51:45
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
查看全部 5 个回答

shengxiang

木虫 (著名写手)

【答案】应助回帖


jiaoyixiong: 金币+1, 鼓励交流 2013-01-08 09:04:01
不知道你之前的fftw和lam是否已经正常安装?
2楼2013-01-07 21:51:04
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

doughtiness

新虫 (小有名气)

你是在什么系统下安装的GMX啊?我最近也是在安装GMX,在ubuntu系统下安装的。
你可以试试如下命令:
GMX并行安装需要3个东西,FFTW,CMAKE和GROMACS自身安装流程:
FFTW:
./configure --enable-threads --enable-float
make
make install
Cmake:
./configure
make
sudo make install
Gromacs:
./configure
make
make install
完成后再各自设置环境变量就可以了
4楼2013-01-08 20:00:13
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

liangjun44

至尊木虫 (著名写手)

引用回帖:
4楼: Originally posted by doughtiness at 2013-01-08 20:00:13
你是在什么系统下安装的GMX啊?我最近也是在安装GMX,在ubuntu系统下安装的。
你可以试试如下命令:
GMX并行安装需要3个东西,FFTW,CMAKE和GROMACS自身安装流程:
FFTW:
./configure --enable-threads --enable- ...

怎样各自设置环境变量?能不能说得具体点?谢谢~
5楼2013-01-09 13:55:43
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[基金申请] 2026年的国家社科基金项目通讯评审的新规则与新动向、新挑战 +5 process2012 2026-08-23 6/300 2026-08-25 08:44 by 白大多亮
[基金申请] 只有每年这种时候来逛逛小木虫 +25 yaoyewhu2008 2026-08-20 27/1350 2026-08-25 08:01 by Equinoxhua
[基金申请] 没有任何消息-是不是就凉了 +7 图啦图啦 2026-08-24 8/400 2026-08-24 22:00 by maomao_da
[基金申请] 人气不行了 +10 fansofjerry 2026-08-21 10/500 2026-08-24 21:03 by zhanghaozhu
[基金申请] 能否退出参与的面上项目解除限项 +21 koalala 2026-08-24 24/1200 2026-08-24 19:25 by 家与远方
[基金申请] filecode,4个jtjc了 +14 ziyangfang 2026-08-19 17/850 2026-08-24 18:37 by 哈哈蛤?
[基金申请] 建议基金发布提前给出明确的时间点 +13 kulium 2026-08-21 16/800 2026-08-24 16:27 by superceng
[基金申请] 今日不放榜?网传国自然预计 8 月 27 日可查结果 +17 医学老男孩 2026-08-20 21/1050 2026-08-24 14:21 by refreshing11
[基金申请] 估计是周四 +4 archvillain 2026-08-18 4/200 2026-08-24 13:53 by zzuzxg
[基金申请] 朋友圈看到的 +7 wangzilk 2026-08-18 9/450 2026-08-24 10:50 by cmrandy
[基金申请] 让我中一个面上吧! +13 大萍1987 2026-08-20 16/800 2026-08-24 10:23 by 太傻了
[基金申请] 放榜前的不淡定 20+4 snowwithsea 2026-08-19 17/850 2026-08-24 10:20 by echo8914667
[基金申请] 什么时候开奖? +10 CrisMessi 2026-08-18 11/550 2026-08-24 06:50 by 开心的小狮子
[基金申请] 今天放榜吗? +15 布布和一二 2026-08-19 16/800 2026-08-23 09:55 by 张春生
[基金申请] 今天基金会出结果吗?20260819 +16 kkkl_v 2026-08-19 17/850 2026-08-22 16:12 by 阿布Abu
[基金申请] 时间戳又变了 +13 wuchongjun 2026-08-20 19/950 2026-08-21 17:21 by 紫杉醇
[基金申请] 应该是下周三26日公布了吧? +4 哈哈蛤? 2026-08-21 4/200 2026-08-21 10:58 by Vivilian
[基金申请] 今天放榜没戏了吧 +9 yuleib84 2026-08-19 11/550 2026-08-21 10:06 by gltch
[基金申请] 重要消息,中午系统在维护 +11 yuleib84 2026-08-18 12/600 2026-08-20 11:09 by xskun
[基金申请] 明天放榜? +5 Shxjjxjkx 2026-08-18 5/250 2026-08-18 18:14 by -大大大大大-
信息提示
请填处理意见