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菲同寻常

新虫 (小有名气)

[求助] 批量提交作业 已有1人参与

我有一系列的文件2k-1.pdb,2k-3.pdb.......,我需要用一个软件对每个文件进行运算生成2k-1.out,2k-2.out.......,我想批量提交这些作业,但是我不知道怎么写脚本,希望大神赐教!
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zaq123321

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【答案】应助回帖

感谢参与,应助指数 +1
What's script are you familiar with? Shell or cash or perk. There is command to read in a file. You can put all your pdb in one file and let the script read in whole file and process for you. Good luck.

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2楼2015-01-02 13:33:42
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菲同寻常

新虫 (小有名气)

引用回帖:
2楼: Originally posted by zaq123321 at 2015-01-02 13:33:42
What's script are you familiar with? Shell or cash or perk. There is command to read in a file. You can put all your pdb in one file and let the script read in whole file and process for you. Good lu ...

我只懂一点shell,我写了一个shell脚本:
#!/bin/bash
for i in *.pdb
do
./shiftx 1X <${i}> ${i}.out
done
这样1.pdb运算后输出的是1.pdb.out ,那个软件不识别这种输出文件名。怎么能让它输出1.out 的文件名?
3楼2015-01-02 13:50:55
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zaq123321

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菲同寻常: 金币+5, ★★★很有帮助 2015-01-02 14:23:11
After do, define base='base name ${i}'
Change >$base.out

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4楼2015-01-02 14:01:02
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zaq123321

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引用回帖:
4楼: Originally posted by zaq123321 at 2015-01-02 14:01:02
After do, define base='base name ${i}'
Change >$base.out

Basename

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5楼2015-01-02 14:02:23
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菲同寻常

新虫 (小有名气)

引用回帖:
5楼: Originally posted by zaq123321 at 2015-01-02 14:02:23
Basename
...

谢谢,我知道了
6楼2015-01-02 14:23:25
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fmying

银虫 (小有名气)

${i%.pbs}也一样,自动从变量内容中抠掉最后的.pdb
上善若水
7楼2015-01-05 09:37:37
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fmying

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引用回帖:
7楼: Originally posted by fmying at 2015-01-05 09:37:37
${i%.pbs}也一样,自动从变量内容中抠掉最后的.pdb

是${i%.pdb}
上善若水
8楼2015-01-05 09:38:17
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