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ÎÒÔÚÍøÉÏÌá½»±È¶ÔÐòÁУ¬µ«ÒªÇó±ØÐëÊÇMAF»òBED¸ñʽµÄ£¬È»ºó¿´ÁËÒ»ÏÂÓ¢ÎÄ˵Ã÷Ê飬²»ÊǺÜÃ÷°×ÆäÖвÎÊýµÄº¬Ò壬ÓÐûÓÐÈËÓÐÖÐÎÄ˵Ã÷Ê飬»òÕ߸øÎÒ½âÊÍһϲÎÊýµÄº¬Ò壬лл¡£ÒÔÏÂÊÇʾÀý£º
BED¸ñʽ£º
Example:
Here's an example of an annotation track that uses a complete BED definition:

track name=pairedReads description="Clone Paired Reads" useScore=1
chr22 1000 5000 cloneA 960 + 1000 5000 0 2 567,488, 0,3512
chr22 2000 6000 cloneB 900 - 2000 6000 0 2 433,399, 0,3601

MAF¸ñʽ£º
track name=euArc visibility=pack
##maf version=1 scoring=tba.v8
# tba.v8 (((human chimp) baboon) (mouse rat))
                  
a score=23262.0     
s hg18.chr7    27578828 38 + 158545518 AAA-GGGAATGTTAACCAAATGA---ATTGTCTCTTACGGTG
s panTro1.chr6 28741140 38 + 161576975 AAA-GGGAATGTTAACCAAATGA---ATTGTCTCTTACGGTG
s baboon         116834 38 +   4622798 AAA-GGGAATGTTAACCAAATGA---GTTGTCTCTTATGGTG
s mm4.chr6     53215344 38 + 151104725 -AATGGGAATGTTAAGCAAACGA---ATTGTCTCTCAGTGTG
s rn3.chr4     81344243 40 + 187371129 -AA-GGGGATGCTAAGCCAATGAGTTGTTGTCTCTCAATGTG

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http://genome.ucsc.edu/FAQ/FAQformat
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ÒýÓûØÌû:
1993663Â¥: Originally posted by genomelin at 2010-08-28 20:52:16:
BED
chr22 1000 5000 cloneA 960 + 1000 5000 0 2 567,488, 0,3512
ȾɫÌ壻»ùÒòÆðʼλÖã¨TSS£©£»ÖÕֹλÖã¨Ter£©;Ãû³Æ;Ã÷°µÖµ£¨ÓÃÓÚcustom trace£©£»ËùÔÚ+-Á´£»CDSÇøÆðʼ£»ÖÕÖ¹£»RGBÑÕÉ«£»exon¸öÊý£»Ã¿¸öexon ...

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5Â¥2012-05-14 19:45:05
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mosike

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Õâ¸ö»¹ÕæÃ»Ìý˵¹ý
3Â¥2010-08-27 19:59:37
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

genomelin

Òø³æ (СÓÐÃûÆø)

BED
chr22 1000 5000 cloneA 960 + 1000 5000 0 2 567,488, 0,3512
ȾɫÌ壻»ùÒòÆðʼλÖã¨TSS£©£»ÖÕֹλÖã¨Ter£©;Ãû³Æ;Ã÷°µÖµ£¨ÓÃÓÚcustom trace£©£»ËùÔÚ+-Á´£»CDSÇøÆðʼ£»ÖÕÖ¹£»RGBÑÕÉ«£»exon¸öÊý£»Ã¿¸öexonµÄlength£¨ÒÔ¡°£¬¡±¸ô¿ª£©£»Ã¿¸öexonÏà¶ÔTSSµÄÆðʼλÖã»
Ŀǰ×îа汾µÄRefgeneÀïÃæ×îºóÒ»¸ö²ÎÊýΪÁË·½±ãʹÓøÄΪ¾ø¶ÔλÖÃÁË£¬µ«²»ÖªµÀÄãÒªµÄÊÇ·ñÓ¦¸Ã¸ü¸Ä¡£
MAFûÓùý£¬µ«UCSCÀï˵Ã÷ͦÏêϸµÄ,²ÎÊý½Ï¶à£¬¿´ÄãÏëÎÊÄĸöÁË£¿

[ Last edited by genomelin on 2010-8-29 at 03:45 ]
4Â¥2010-08-28 20:52:16
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

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