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[求助]
GenBank上2段gene信息对应1段核苷酸序列 已有1人参与
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在以下的信息中，有2段“gene”信息，但只有1段核苷酸序列，经核实该核苷酸序列与第一段“gene”信息的蛋白质编码对应，那么第二段“gene”讲的是什么内容，与第一段“gene”什么关系，我想要第二段“gene”的核苷酸序列在哪找？本人小白，请各位大侠多多赐教，非常感谢！！！ LOCUS NZ_JH393259 669 bp DNA linear CON 23-JAN-2015 DEFINITION Halomonas boliviensis LC1 Scaffold3, whole genome shotgun sequence. ACCESSION NZ_JH393259 REGION: 193433..194101 VERSION NZ_JH393259.1 GI:359396345 DBLINK BioProject: PRJNA224116 BioSample: SAMN02471366 KEYWORDS WGS; RefSeq. SOURCE Halomonas boliviensis LC1 ORGANISM Halomonas boliviensis LC1 Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas. REFERENCE 1 (bases 1 to 669) AUTHORS Quillaguamn,J., Guzmn,D., Balderrama-Subieta,A., Cardona-Ortuo,C., Guevara-Martnez,M. and Callisaya-Quispe,N. TITLE Direct Submission JOURNAL Submitted (12-OCT-2011) Center of Biotechnology, Faculty of Sciences and Technology, University Campus, Universidad Mayor de San Simn, Sucre Street, Cochabamba CERCADO-401, Bolivia COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 16-AUG-2011 Assembly Method :: SOAPDenovo v. 1.05 Assembly Name :: KUC0.1 Genome Coverage :: 170x Sequencing Technology :: Illumina HiSeq 2000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 12/07/2014 00:53:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.9 (rev. 452448) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,802 CDS :: 3,696 Pseudo Genes :: 41 CRISPR Arrays :: 1 rRNAs :: 4 ( 16S, 23S ) tRNAs :: 61 ncRNA :: 1 Frameshifted Genes :: 35 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..669 /organism="Halomonas boliviensis LC1" /mol_type="genomic DNA" /strain="LC1" /isolation_source="soil around the hypersaline lake Laguna Colorada" /culture_collection="DSM:15516" /db_xref="taxon:1072583" /country="Bolivia" gene complement(1..669) /locus_tag="KUC_RS15385" /old_locus_tag="KUC_3211" CDS complement(1..669) /locus_tag="KUC_RS15385" /old_locus_tag="KUC_3211" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_009724649.1" /note="two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="WP_007114147.1" /db_xref="GI:494175059" /translation="MTLTTAKDTPASLMIIDDHPLLRRGVIQLLELEDDLELVGETGD PEEGIALALKLEPDLVLLDLNMPGVNGLEALRRLREANYSGRVVMFTVSDHEDDVVAA LRTGADGYLLKDMEPEDMVRQLRQAALGRMVISESLTALLAEALRNQRNAPSTPDIHS LTQREREILQQLAGGLSNKLIARKLDITEGTVKVHVKHLLKKLNLRSRVEAAVWAVQE GIDH" gene complement(669..>669) /locus_tag="KUC_RS15390" /old_locus_tag="KUC_3212" CDS complement(669..>669) /locus_tag="KUC_RS15390" /old_locus_tag="KUC_3212" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_009286637.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Nitrate/nitrite sensor protein narX" /protein_id="WP_007114148.1" /db_xref="GI:494175061" /translation="MKLLQRSLVARIIASLLAISGMALISITLTMAMSNSSRGDAAAI NVAGSLRMNAYQILGALQRLEYVPEETSEEQLEGLITRFDQRLHGTTLQQTIPADDRH ERRRQLEKLQTYWLHTLRPALQAPSTTAQLDLDTREAMIVAMVNDIEMLVTYLEQSTE AKVRLLGMMQVIFLVLIAIVVAIALYDVRYNLVVPLRQLMVLAREAAQRNFKPRSQLR GSDELALLGHTFNKMSAELATSYAALEDKVSRKKQELERSNQALRVMHDASRALYGGG NDLCSSAAPMLRELEKLLNIGPIRLSLKDPFDQRAMPVLETHSRTRPEYCRDQDCHAC LIDPRPLDLVANNQSQCLLLPISVGDTLLGTLEVWYPQERLNDSTRRLLTILADQLAT AVYLQRRIEEQQHVTLINERTIIARELHDSLAQSLSYLKMQVARLERMQQKEATREAQ SAVFDELRTGLNSAYRQLRELLTTFRLKLEGPGLQFALRQTIEEFSQRMEATVELDYD VPPYLLNPNEEIHVLQIIREALANTHKHAQAHWAKVTVRFADARLLVRIEDDGIGLED DSSPPMHYGLVIIRDRTTTLNGQLSIANRPAGGASVEVDFTPLTARLIQQQPASAAPN SHLGTGTS" ORIGIN 1 ctagtgatcg ataccttcct gaactgccca gacggcggct tcgacacgtg agcgtaagtt 61 gagctttttg agcaggtgct tgacgtgaac cttgaccgtg ccttcagtaa tatccagctt 121 gcgcgcgatg agcttgttgg agagcccgcc agcaagctgt tgcagaattt cacgttcacg 181 ttgggtcagg ctgtgaatgt cgggtgtgga gggcgcattg cgctgattac gcagggcttc 241 agcgagtagg gcagtcagac tttcactgat caccatgcgg cccagagcag cctgacgcag 301 ctggcgaacc atgtcttcag gctccatatc ttttagcagg taaccatcgg caccggtacg 361 cagtgccgcg acaacgtcat cctcatggtc ggaaacagtg aacatcacca cacggccgct 421 atagttagct tcccgaaggc gacgcagcgc ttctagtcca ttgacgcccg gcatgtttaa 481 gtcaagtaac accaaatcag gctcgagctt gagggccagg gcaatgccct cttcgggatc 541 gcccgtctcg ccaaccagtt caaggtcgtc ttctagctca agcagctgaa tcacaccacg 601 ccgcagtagc ggatggtcgt cgataatcat cagactggca ggcgtgtctt tggcagttgt 661 cagcgtcat // |
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3楼2015-02-13 17:29:32
【答案】应助回帖
感谢参与，应助指数 +1
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Halomonas boliviensis LC1 Scaffold3, whole genome shotgun sequence NCBI Reference Sequence: NZ_JH393259.1 FASTA Graphics Go to: LOCUS NZ_JH393259 1899 bp DNA linear CON 23-JAN-2015 DEFINITION Halomonas boliviensis LC1 Scaffold3, whole genome shotgun sequence. ACCESSION NZ_JH393259 REGION: 194101..195999 VERSION NZ_JH393259.1 GI:359396345 DBLINK BioProject: PRJNA224116 BioSample: SAMN02471366 KEYWORDS WGS; RefSeq. SOURCE Halomonas boliviensis LC1 ORGANISM Halomonas boliviensis LC1 Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas. REFERENCE 1 (bases 1 to 1899) AUTHORS Quillaguamn,J., Guzmn,D., Balderrama-Subieta,A., Cardona-Ortuo,C., Guevara-Martnez,M. and Callisaya-Quispe,N. TITLE Direct Submission JOURNAL Submitted (12-OCT-2011) Center of Biotechnology, Faculty of Sciences and Technology, University Campus, Universidad Mayor de San Simn, Sucre Street, Cochabamba CERCADO-401, Bolivia COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 16-AUG-2011 Assembly Method :: SOAPDenovo v. 1.05 Assembly Name :: KUC0.1 Genome Coverage :: 170x Sequencing Technology :: Illumina HiSeq 2000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 12/07/2014 00:53:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.9 (rev. 452448) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,802 CDS :: 3,696 Pseudo Genes :: 41 CRISPR Arrays :: 1 rRNAs :: 4 ( 16S, 23S ) tRNAs :: 61 ncRNA :: 1 Frameshifted Genes :: 35 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1899 /organism="Halomonas boliviensis LC1" /mol_type="genomic DNA" /strain="LC1" /isolation_source="soil around the hypersaline lake Laguna Colorada" /culture_collection="DSM:15516" /db_xref="taxon:1072583" /country="Bolivia" gene complement(1..1899) /locus_tag="KUC_RS15390" /old_locus_tag="KUC_3212" CDS complement(1..1899) /locus_tag="KUC_RS15390" /old_locus_tag="KUC_3212" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_009286637.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Nitrate/nitrite sensor protein narX" /protein_id="WP_007114148.1" /db_xref="GI:494175061" /translation="MKLLQRSLVARIIASLLAISGMALISITLTMAMSNSSRGDAAAI NVAGSLRMNAYQILGALQRLEYVPEETSEEQLEGLITRFDQRLHGTTLQQTIPADDRH ERRRQLEKLQTYWLHTLRPALQAPSTTAQLDLDTREAMIVAMVNDIEMLVTYLEQSTE AKVRLLGMMQVIFLVLIAIVVAIALYDVRYNLVVPLRQLMVLAREAAQRNFKPRSQLR GSDELALLGHTFNKMSAELATSYAALEDKVSRKKQELERSNQALRVMHDASRALYGGG NDLCSSAAPMLRELEKLLNIGPIRLSLKDPFDQRAMPVLETHSRTRPEYCRDQDCHAC LIDPRPLDLVANNQSQCLLLPISVGDTLLGTLEVWYPQERLNDSTRRLLTILADQLAT AVYLQRRIEEQQHVTLINERTIIARELHDSLAQSLSYLKMQVARLERMQQKEATREAQ SAVFDELRTGLNSAYRQLRELLTTFRLKLEGPGLQFALRQTIEEFSQRMEATVELDYD VPPYLLNPNEEIHVLQIIREALANTHKHAQAHWAKVTVRFADARLLVRIEDDGIGLED DSSPPMHYGLVIIRDRTTTLNGQLSIANRPAGGASVEVDFTPLTARLIQQQPASAAPN SHLGTGTS" ORIGIN 1 ttaagaagtc cctgtgccta agtgagagtt gggggcagcc gaagcgggct gctgctgaat 61 taagcgagcg gttaaagggg taaagtctac ctcaacactg gctcctccgg cggggcgatt 121 ggcgatgctc agttgcccat tcagggtagt ggtacggtcg cgtatgatca ccaagccgta 181 atgcattggc ggtgagctat cgtcttccaa gccgatgccg tcatcctcga tacgcactaa 241 caggcgggca tcggcgaatc ttactgtgac cttggcccaa tgggcttggg cgtgtttgtg 301 ggtattggcc agtgcttcac gaataatctg cagtacgtga atttcttcat tgggattaag 361 tagataaggc ggcacatcgt agtcaagctc gaccgttgcc tccatacgct ggctgaactc 421 ctcgatggtc tggcgtaagg caaattgcag ccccggcccc tcaagtttga gtcggaaagt 481 ggtgagtagc tcacgcagtt gacgataggc gctgttcaaa ccggtgcgca gctcatcgaa 541 taccgcggac tgagcctcgc gggttgcctc tttttgctgc atacgttcga gtcgggcgac 601 ctgcattttt aggtaagata gcgattgcgc tagagagtcg tgcagttcgc gcgcaatgat 661 tgttcgctcg ttgatcagtg tgacgtgctg ctgctcttcg atacgccgct gcaggtacac 721 cgccgtggcc agctgatcgg ctaatattgt gagcagtcga cgggtgctat cgttgagccg 781 ttcctgggga taccacactt ccagggtgcc tagcagcgta tcgcctacgc tgatcggtag 841 cagcaggcat tgcgactggt tattggccac cagatccagg gggcgaggat caatcaggca 901 ggcatggcaa tcttggtcac ggcaatactc tggtcgggta cgcgaatgag tttccagtac 961 cggcattgcc cgttgatcga aagggtcttt taacgaaagg cgtattggcc cgatattcaa 1021 cagcttttcc agttcgcgca gcatgggagc tgcgctagag cagaggtcgt taccgccgcc 1081 atacagcgcg cgactggcat catgcatcac ccgcagcgcc tgattgctgc gctcaagttc 1141 ctgtttcttg cgggatacct tgtcttccaa cgcggcgtaa cttgttgcca gctcggccga 1201 catcttgtta aaggtatggc ccaataatgc cagctcgtcg ctaccgcgga gctgtgaacg 1261 gggcttgaaa ttacgctgcg ccgcctcacg ggccagcacc ataagttggc gcaaagggac 1321 taccagattg tagcgaacat cgtagagagc gatggcgacc actatcgcaa tcaacactaa 1381 aaagatcact tgcatcatgc ccagcagccg caccttggcc tcggtgctct gttccaggta 1441 ggtgactagc atctcgatgt cattgaccat cgcaacgatc atcgcttctc gcgtatccag 1501 gtcaagctgt gcggtggtgg acggtgcttg tagtgccggg cgaagcgtgt gcagccagta 1561 ggtttgaagt ttttccagtt gacggcggcg ctcgtgacga tcatcggcgg ggatcgtttg 1621 ctgtagcgtt gtgccatgca aacgctgatc aaagcgcgtt atcagacctt cgagctgttc 1681 ttcgcttgtt tcctccggga catactcaag gcgttgcaag gcccccaata tctgataggc 1741 attcatgcgt aatgagccag cgacattgat cgcggcagca tcgccacggc tgctgttaga 1801 cattgccatg gtcagggtga tgctgatgag ggccataccg ctaatggcca gcagagacgc 1861 aatgatgcga gcaaccaggg agcgttgaag taatttcat // |
2楼2015-02-13 17:22:00
