24小时热门版块排行榜

返回列表

wt414441794

铁虫 (正式写手)

应助: 0 (幼儿园)
金币: 3199
帖子: 886
在线: 49.4小时
虫号: 958419
注册: 2010-03-01
专业: 环境微生物学

[求助] GenBank上2段gene信息对应1段核苷酸序列已有1人参与

在以下的信息中，有2段“gene”信息，但只有1段核苷酸序列，经核实该核苷酸序列与第一段“gene”信息的蛋白质编码对应，那么第二段“gene”讲的是什么内容，与第一段“gene”什么关系，我想要第二段“gene”的核苷酸序列在哪找？本人小白，请各位大侠多多赐教，非常感谢！！！
LOCUS    NZ_JH393259             669 bp DNA    linear CON 23-JAN-2015
DEFINITION  Halomonas boliviensis LC1 Scaffold3, whole genome shotgun sequence.
ACCESSION NZ_JH393259 REGION: 193433..194101
VERSION    NZ_JH393259.1  GI:359396345
DBLINK    BioProject: PRJNA224116
         BioSample: SAMN02471366
KEYWORDS WGS; RefSeq.
SOURCE    Halomonas boliviensis LC1
  ORGANISM  Halomonas boliviensis LC1
         Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
         Halomonadaceae; Halomonas.
REFERENCE 1  (bases 1 to 669)
  AUTHORS Quillaguamn,J., Guzmn,D., Balderrama-Subieta,A., Cardona-Ortuo,C.,
         Guevara-Martnez,M. and Callisaya-Quispe,N.
  TITLE    Direct Submission
  JOURNAL Submitted (12-OCT-2011) Center of Biotechnology, Faculty of
         Sciences and Technology, University Campus, Universidad Mayor de
         San Simn, Sucre Street, Cochabamba CERCADO-401, Bolivia
COMMENT    VALIDATED REFSEQ: This record has undergone validation or
         preliminary review.
         Annotation was added by the NCBI Prokaryotic Genome Annotation
         Pipeline (released 2013). Information about the Pipeline can be
         found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

         ##Genome-Assembly-Data-START##
         Assembly Date       :: 16-AUG-2011
         Assembly Method    :: SOAPDenovo v. 1.05
         Assembly Name       :: KUC0.1
         Genome Coverage    :: 170x
         Sequencing Technology :: Illumina HiSeq 2000
         ##Genome-Assembly-Data-END##

         ##Genome-Annotation-Data-START##
         Annotation Provider       :: NCBI
         Annotation Date             :: 12/07/2014 00:53:23
         Annotation Pipeline       :: NCBI Prokaryotic Genome Annotation
                                          Pipeline
         Annotation Method          :: Best-placed reference protein set;
                                          GeneMarkS+
         Annotation Software revision :: 2.9 (rev. 452448)
         Features Annotated          :: Gene; CDS; rRNA; tRNA; ncRNA;
                                          repeat_region
         Genes                      :: 3,802
         CDS                         :: 3,696
         Pseudo Genes                :: 41
         CRISPR Arrays             :: 1
         rRNAs                      :: 4 ( 16S, 23S )
         tRNAs                      :: 61
         ncRNA                      :: 1
         Frameshifted Genes          :: 35
         ##Genome-Annotation-Data-END##
FEATURES          Location/Qualifiers
   source       1..669
                  /organism="Halomonas boliviensis LC1"
                  /mol_type="genomic DNA"
                  /strain="LC1"
                  /isolation_source="soil around the hypersaline lake Laguna
                  Colorada"
                  /culture_collection="DSM:15516"
                  /db_xref="taxon:1072583"
                  /country="Bolivia"
   gene          complement(1..669)
                  /locus_tag="KUC_RS15385"
                  /old_locus_tag="KUC_3211"
   CDS          complement(1..669)
                  /locus_tag="KUC_RS15385"
                  /old_locus_tag="KUC_3211"
                  /inference="EXISTENCE: similar to AA
                  sequence:RefSeq:WP_009724649.1"
                  /note="two-component response regulator NarL;
                  phosphorylated by NarQ; activates transcription of nitrate
                  and nitrite reductase genes and represses transcription of
                  fumarate reductase; Derived by automated computational
                  analysis using gene prediction method: Protein Homology."
                  /codon_start=1
                  /transl_table=11
                  /product="transcriptional regulator"
                  /protein_id="WP_007114147.1"
                  /db_xref="GI:494175059"
                  /translation="MTLTTAKDTPASLMIIDDHPLLRRGVIQLLELEDDLELVGETGD
                  PEEGIALALKLEPDLVLLDLNMPGVNGLEALRRLREANYSGRVVMFTVSDHEDDVVAA
                  LRTGADGYLLKDMEPEDMVRQLRQAALGRMVISESLTALLAEALRNQRNAPSTPDIHS
                  LTQREREILQQLAGGLSNKLIARKLDITEGTVKVHVKHLLKKLNLRSRVEAAVWAVQE
                  GIDH"
   gene          complement(669..>669)
                  /locus_tag="KUC_RS15390"
                  /old_locus_tag="KUC_3212"
   CDS          complement(669..>669)
                  /locus_tag="KUC_RS15390"
                  /old_locus_tag="KUC_3212"
                  /inference="EXISTENCE: similar to AA
                  sequence:RefSeq:WP_009286637.1"
                  /note="Derived by automated computational analysis using
                  gene prediction method: Protein Homology."
                  /codon_start=1
                  /transl_table=11
                  /product="Nitrate/nitrite sensor protein narX"
                  /protein_id="WP_007114148.1"
                  /db_xref="GI:494175061"
                  /translation="MKLLQRSLVARIIASLLAISGMALISITLTMAMSNSSRGDAAAI
                  NVAGSLRMNAYQILGALQRLEYVPEETSEEQLEGLITRFDQRLHGTTLQQTIPADDRH
                  ERRRQLEKLQTYWLHTLRPALQAPSTTAQLDLDTREAMIVAMVNDIEMLVTYLEQSTE
                  AKVRLLGMMQVIFLVLIAIVVAIALYDVRYNLVVPLRQLMVLAREAAQRNFKPRSQLR
                  GSDELALLGHTFNKMSAELATSYAALEDKVSRKKQELERSNQALRVMHDASRALYGGG
                  NDLCSSAAPMLRELEKLLNIGPIRLSLKDPFDQRAMPVLETHSRTRPEYCRDQDCHAC
                  LIDPRPLDLVANNQSQCLLLPISVGDTLLGTLEVWYPQERLNDSTRRLLTILADQLAT
                  AVYLQRRIEEQQHVTLINERTIIARELHDSLAQSLSYLKMQVARLERMQQKEATREAQ
                  SAVFDELRTGLNSAYRQLRELLTTFRLKLEGPGLQFALRQTIEEFSQRMEATVELDYD
                  VPPYLLNPNEEIHVLQIIREALANTHKHAQAHWAKVTVRFADARLLVRIEDDGIGLED
                  DSSPPMHYGLVIIRDRTTTLNGQLSIANRPAGGASVEVDFTPLTARLIQQQPASAAPN
                  SHLGTGTS"
ORIGIN
      1 ctagtgatcg ataccttcct gaactgccca gacggcggct tcgacacgtg agcgtaagtt
   61 gagctttttg agcaggtgct tgacgtgaac cttgaccgtg ccttcagtaa tatccagctt
   121 gcgcgcgatg agcttgttgg agagcccgcc agcaagctgt tgcagaattt cacgttcacg
   181 ttgggtcagg ctgtgaatgt cgggtgtgga gggcgcattg cgctgattac gcagggcttc
   241 agcgagtagg gcagtcagac tttcactgat caccatgcgg cccagagcag cctgacgcag
   301 ctggcgaacc atgtcttcag gctccatatc ttttagcagg taaccatcgg caccggtacg
   361 cagtgccgcg acaacgtcat cctcatggtc ggaaacagtg aacatcacca cacggccgct
   421 atagttagct tcccgaaggc gacgcagcgc ttctagtcca ttgacgcccg gcatgtttaa
   481 gtcaagtaac accaaatcag gctcgagctt gagggccagg gcaatgccct cttcgggatc
   541 gcccgtctcg ccaaccagtt caaggtcgtc ttctagctca agcagctgaa tcacaccacg
   601 ccgcagtagc ggatggtcgt cgataatcat cagactggca ggcgtgtctt tggcagttgt
   661 cagcgtcat
//

回复此楼

» 猜你喜欢

» 本主题相关价值贴推荐，对您同样有帮助:

从酶的氨基酸序列查找编码它的核苷酸序列的注册号（Accession No.) 已经有6人回复
知道肽序列，如何查找数据库已经有5人回复
求助：NCBI提交序列问题已经有5人回复
怎样在NCBI上查找基因的cDNA序列已经有14人回复
在GenBank里面查找cDNA的目的是什么？已经有3人回复
NCBI上传序列问题已经有1人回复
Genebank序列提交已经有10人回复
序列上传NCBI，3个月了，还检索不到！已经有14人回复
求助——genbank基因组序列的查询已经有4人回复
已知基因的氨基酸序列，怎么在NCBI上找到核苷酸序列啊~~ 已经有9人回复
如何查找一段基因序列的启动子？已经有3人回复
MEGA进行聚类分析中使用的序列是什么序列？怎样获得？已经有4人回复
如何上传菌株的序列号已经有8人回复
上有核酸，下有氨基酸序列的图片如何做已经有9人回复
请问在GenBank上找到了一条序列，怎样知道作者所用引物的序列？已经有9人回复
提问-ncbi 序列修改已经有4人回复
NCBI中新序列的登录号怎么获取？已经有9人回复
【求助/交流】有登陆号，如何批量从Genbank中导出fasta格式的核酸序列已经有6人回复
【求助/交流】求助：如何能在genbank中快速批量下载序列已经有6人回复
【求助/交流】请问，有没有谁知道，如何从NCBI上批量下载一类gene的核苷酸序列？已经有13人回复
【求助/交流】关于序列去genbank比对的问题已经有11人回复

1楼 2015-02-13 16:21:00

已阅回复此楼关注TA 给TA发消息送TA红花 TA的回帖

ptttmt

银虫 (正式写手)

应助: 85 (初中生)
金币: 1216.4
红花: 12
帖子: 519
在线: 192.8小时
虫号: 3621717
注册: 2014-12-31
专业: 病毒学

【答案】应助回帖

感谢参与，应助指数 +1

Halomonas boliviensis LC1 Scaffold3, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JH393259.1

FASTA Graphics

Go to:

LOCUS    NZ_JH393259          1899 bp DNA    linear CON 23-JAN-2015
DEFINITION  Halomonas boliviensis LC1 Scaffold3, whole genome shotgun sequence.
ACCESSION NZ_JH393259 REGION: 194101..195999
VERSION    NZ_JH393259.1  GI:359396345
DBLINK    BioProject: PRJNA224116
         BioSample: SAMN02471366
KEYWORDS WGS; RefSeq.
SOURCE    Halomonas boliviensis LC1
  ORGANISM  Halomonas boliviensis LC1
         Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
         Halomonadaceae; Halomonas.
REFERENCE 1  (bases 1 to 1899)
  AUTHORS Quillaguamn,J., Guzmn,D., Balderrama-Subieta,A., Cardona-Ortuo,C.,
         Guevara-Martnez,M. and Callisaya-Quispe,N.
  TITLE    Direct Submission
  JOURNAL Submitted (12-OCT-2011) Center of Biotechnology, Faculty of
         Sciences and Technology, University Campus, Universidad Mayor de
         San Simn, Sucre Street, Cochabamba CERCADO-401, Bolivia
COMMENT    VALIDATED REFSEQ: This record has undergone validation or
         preliminary review.
         Annotation was added by the NCBI Prokaryotic Genome Annotation
         Pipeline (released 2013). Information about the Pipeline can be
         found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

         ##Genome-Assembly-Data-START##
         Assembly Date       :: 16-AUG-2011
         Assembly Method    :: SOAPDenovo v. 1.05
         Assembly Name       :: KUC0.1
         Genome Coverage    :: 170x
         Sequencing Technology :: Illumina HiSeq 2000
         ##Genome-Assembly-Data-END##

         ##Genome-Annotation-Data-START##
         Annotation Provider       :: NCBI
         Annotation Date             :: 12/07/2014 00:53:23
         Annotation Pipeline       :: NCBI Prokaryotic Genome Annotation
                                          Pipeline
         Annotation Method          :: Best-placed reference protein set;
                                          GeneMarkS+
         Annotation Software revision :: 2.9 (rev. 452448)
         Features Annotated          :: Gene; CDS; rRNA; tRNA; ncRNA;
                                          repeat_region
         Genes                      :: 3,802
         CDS                         :: 3,696
         Pseudo Genes                :: 41
         CRISPR Arrays             :: 1
         rRNAs                      :: 4 ( 16S, 23S )
         tRNAs                      :: 61
         ncRNA                      :: 1
         Frameshifted Genes          :: 35
         ##Genome-Annotation-Data-END##
FEATURES          Location/Qualifiers
   source       1..1899
                  /organism="Halomonas boliviensis LC1"
                  /mol_type="genomic DNA"
                  /strain="LC1"
                  /isolation_source="soil around the hypersaline lake Laguna
                  Colorada"
                  /culture_collection="DSM:15516"
                  /db_xref="taxon:1072583"
                  /country="Bolivia"
   gene          complement(1..1899)
                  /locus_tag="KUC_RS15390"
                  /old_locus_tag="KUC_3212"
   CDS          complement(1..1899)
                  /locus_tag="KUC_RS15390"
                  /old_locus_tag="KUC_3212"
                  /inference="EXISTENCE: similar to AA
                  sequence:RefSeq:WP_009286637.1"
                  /note="Derived by automated computational analysis using
                  gene prediction method: Protein Homology."
                  /codon_start=1
                  /transl_table=11
                  /product="Nitrate/nitrite sensor protein narX"
                  /protein_id="WP_007114148.1"
                  /db_xref="GI:494175061"
                  /translation="MKLLQRSLVARIIASLLAISGMALISITLTMAMSNSSRGDAAAI
                  NVAGSLRMNAYQILGALQRLEYVPEETSEEQLEGLITRFDQRLHGTTLQQTIPADDRH
                  ERRRQLEKLQTYWLHTLRPALQAPSTTAQLDLDTREAMIVAMVNDIEMLVTYLEQSTE
                  AKVRLLGMMQVIFLVLIAIVVAIALYDVRYNLVVPLRQLMVLAREAAQRNFKPRSQLR
                  GSDELALLGHTFNKMSAELATSYAALEDKVSRKKQELERSNQALRVMHDASRALYGGG
                  NDLCSSAAPMLRELEKLLNIGPIRLSLKDPFDQRAMPVLETHSRTRPEYCRDQDCHAC
                  LIDPRPLDLVANNQSQCLLLPISVGDTLLGTLEVWYPQERLNDSTRRLLTILADQLAT
                  AVYLQRRIEEQQHVTLINERTIIARELHDSLAQSLSYLKMQVARLERMQQKEATREAQ
                  SAVFDELRTGLNSAYRQLRELLTTFRLKLEGPGLQFALRQTIEEFSQRMEATVELDYD
                  VPPYLLNPNEEIHVLQIIREALANTHKHAQAHWAKVTVRFADARLLVRIEDDGIGLED
                  DSSPPMHYGLVIIRDRTTTLNGQLSIANRPAGGASVEVDFTPLTARLIQQQPASAAPN
                  SHLGTGTS"
ORIGIN
      1 ttaagaagtc cctgtgccta agtgagagtt gggggcagcc gaagcgggct gctgctgaat
   61 taagcgagcg gttaaagggg taaagtctac ctcaacactg gctcctccgg cggggcgatt
   121 ggcgatgctc agttgcccat tcagggtagt ggtacggtcg cgtatgatca ccaagccgta
   181 atgcattggc ggtgagctat cgtcttccaa gccgatgccg tcatcctcga tacgcactaa
   241 caggcgggca tcggcgaatc ttactgtgac cttggcccaa tgggcttggg cgtgtttgtg
   301 ggtattggcc agtgcttcac gaataatctg cagtacgtga atttcttcat tgggattaag
   361 tagataaggc ggcacatcgt agtcaagctc gaccgttgcc tccatacgct ggctgaactc
   421 ctcgatggtc tggcgtaagg caaattgcag ccccggcccc tcaagtttga gtcggaaagt
   481 ggtgagtagc tcacgcagtt gacgataggc gctgttcaaa ccggtgcgca gctcatcgaa
   541 taccgcggac tgagcctcgc gggttgcctc tttttgctgc atacgttcga gtcgggcgac
   601 ctgcattttt aggtaagata gcgattgcgc tagagagtcg tgcagttcgc gcgcaatgat
   661 tgttcgctcg ttgatcagtg tgacgtgctg ctgctcttcg atacgccgct gcaggtacac
   721 cgccgtggcc agctgatcgg ctaatattgt gagcagtcga cgggtgctat cgttgagccg
   781 ttcctgggga taccacactt ccagggtgcc tagcagcgta tcgcctacgc tgatcggtag
   841 cagcaggcat tgcgactggt tattggccac cagatccagg gggcgaggat caatcaggca
   901 ggcatggcaa tcttggtcac ggcaatactc tggtcgggta cgcgaatgag tttccagtac
   961 cggcattgcc cgttgatcga aagggtcttt taacgaaagg cgtattggcc cgatattcaa
   1021 cagcttttcc agttcgcgca gcatgggagc tgcgctagag cagaggtcgt taccgccgcc
   1081 atacagcgcg cgactggcat catgcatcac ccgcagcgcc tgattgctgc gctcaagttc
   1141 ctgtttcttg cgggatacct tgtcttccaa cgcggcgtaa cttgttgcca gctcggccga
   1201 catcttgtta aaggtatggc ccaataatgc cagctcgtcg ctaccgcgga gctgtgaacg
   1261 gggcttgaaa ttacgctgcg ccgcctcacg ggccagcacc ataagttggc gcaaagggac
   1321 taccagattg tagcgaacat cgtagagagc gatggcgacc actatcgcaa tcaacactaa
   1381 aaagatcact tgcatcatgc ccagcagccg caccttggcc tcggtgctct gttccaggta
   1441 ggtgactagc atctcgatgt cattgaccat cgcaacgatc atcgcttctc gcgtatccag
   1501 gtcaagctgt gcggtggtgg acggtgcttg tagtgccggg cgaagcgtgt gcagccagta
   1561 ggtttgaagt ttttccagtt gacggcggcg ctcgtgacga tcatcggcgg ggatcgtttg
   1621 ctgtagcgtt gtgccatgca aacgctgatc aaagcgcgtt atcagacctt cgagctgttc
   1681 ttcgcttgtt tcctccggga catactcaag gcgttgcaag gcccccaata tctgataggc
   1741 attcatgcgt aatgagccag cgacattgat cgcggcagca tcgccacggc tgctgttaga
   1801 cattgccatg gtcagggtga tgctgatgag ggccataccg ctaatggcca gcagagacgc
   1861 aatgatgcga gcaaccaggg agcgttgaag taatttcat
//