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[求助]
求助有关生物信息学的
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| 本人刚接触生物信息学软件，现在老师让我从线粒体基因组全序列中将所有单个的编码基因析出，一个一个的析出太慢了，时间不够，老师自己对这块不懂，让我自己弄，我没学过，希望有人可以指点帮忙 |
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现在GB文件已经有了，程序该怎么改，这是其中一个，向这种的文件有将近100个 LOCUS AB055624 16967 bp DNA linear INV 21-DEC-2012 DEFINITION Unio japanensis mitochondrial DNA, COIII to CO1 region, haplotype:male type. ACCESSION AB055624 VERSION AB055624.1 GI:15128581 KEYWORDS . SOURCE mitochondrion Unio japanensis ORGANISM Unio japanensis Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Bivalvia; Palaeoheterodonta; Unionoida; Unionoidea; Unionidae; Unioninae; Unio. REFERENCE 1 AUTHORS Okazaki,M. and Ueshima,R. TITLE Evolutionary diversity between the gender-associate mitochondrial DNA genomes of freshwater mussels JOURNAL Unpublished REFERENCE 2 (bases 1 to 16967) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (07-FEB-2001) Contact:Masahiro Okazaki University of Tokyo, Biological Sciences; hongo 7-3-1, Bunkyo-ku, Tokyo 113-0033, Japan FEATURES Location/Qualifiers source 1..16967 /organism="Unio japanensis" /organelle="mitochondrion" /mol_type="genomic DNA" /db_xref="taxon:1260922" /haplotype="male type" /sex="male" /tissue_type="spermatozoon" /note="germ line; synonym: Inversidens japanensis" gene <1..789 /gene="COIII" CDS <1..789 /gene="COIII" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit III" /protein_id="BAB62758.1" /db_xref="GI:15128582" /translation="VKLKEIRSPFHLVEMSPWPLFSSVSAVCLVVGFVSWLSGGSLCL LFLGVGLVSAVLFQWWRDIIRESNQGWHTSYVASNVRLGMVLFIVSEVFFFFGFFWAF FSCSLVPGVEVGSVWPPVGIVPLNPFGLPLLNTAVLLGSGVSVTWAHHAVLAGDRKEA MIGLVFTIMMGLYFTFLQACEYVECSFSIADSVYGSLFYVMTGFHGVHVVMGTLILSV GFFRCFGFGFSSERHLGLELGIWYWHFVDVVWICLFLCVYWWGG" gene 803..1465 /gene="ATP6" CDS 803..1465 /gene="ATP6" /codon_start=1 /transl_table=5 /product="ATPase complex subunit 6" /protein_id="BAB62759.1" /db_xref="GI:15128583" /translation="MLTDIFSSLDFYYVNESRSYFISWLSYFGFVVGGLAVYPQKGGF WVGGSWFLRVVHSLMGVVFQIVVDCKGYRFGGFSLGCVGGFWMLVLLNFGGMVPGSAS LTSQLSVGLSLALLWWSWSTLSGCFYSWKSFLGHLLPLGTPVVLCPLMILIESVSVLI RPVTLAVRLVANITMGHLVLSLMGDNLIGGGSVIVGAYGVVWVLCLRFAGLCVYFVGE FV" tRNA complement(1759..1824) /product="tRNA-Asp" gene 2189..2497 /gene="ND4L" CDS 2189..2497 /gene="ND4L" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase complex 4L" /protein_id="BAB62760.1" /db_xref="GI:15128584" /translation="MSVGLGYNQSAVCVVLVVLAISCIMFQRHSLLMVLLGFEVFSLV LFSCFISVFGVMQTPVGLSLVFLCLEVCVMSVCLALMVKLVSCVGSDYVGVASLGSDF " gene 2490..3851 /gene="ND4" CDS 2490..3851 /gene="ND4" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase complex 4" /protein_id="BAB62761.1" /db_xref="GI:15128585" /translation="MFSVVLSIWLALLASWLCGQLSWWVVTWVCQLSVLAIILGGFMG VGVPNCNLGGEFCCDEVSCGFIWLSAFIASLSLVSSGDILASKDSSSVFLVAVVSLCL VLCVCFATDSLFVFYVLFESSLIPTLFIICGWGYQPERLRAGKYLVLYMVSASLPLLG FILYTAFVWGSDSFALLCVVRGVLSSSPGLFLVVTLAFLVKSPMYGVHMWLPKAHVEA PVAGSMFLAGILLKLGGYGLVRFMGVLNLVGVMYSLVVCLCVFGGVVASVVCCVQTDA KSLVAYSSVGHMGLALGGLMSGGYWGLGGGYLLMVAHGLTSCGMFYLVGELYKSYSSR MLFVIRGGVGNLFGINLWLAFMCGFNAAAPPSLSLCSEVILCISLISYSLWFSVLVGA LGFLSCLYSWSFYCNTQTGCYPAWARAFHSTSYSYNQSLVCVSIVFPLVGLSLCCEYG KFF" gene complement(3848..4375) /gene="ND6" CDS complement(3848..4375) /gene="ND6" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase complex 6" /protein_id="BAB62762.1" /db_xref="GI:15128586" /translation="MTLMIFLSMSITLLCSSVFSAHPLVLTVKVLLLATTISLTLAHI TTWYAYMLYMVMVGGMLVMFTYISSLSPNGIFQLKPQLAHLATTLIPGFLLAHSTSST PSTLNTQDHHNTPENFICFFLENGNEKLLLTSATILLLALLMSMTLLPRTKAPMRPTI FYSSHMMHSNMLCNY" tRNA complement(4377..4443) /product="tRNA-Gly" gene complement(4448..5326) /gene="ND1" CDS complement(4448..5326) /gene="ND1" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase complex 1" /protein_id="BAB62763.1" /db_xref="GI:15128587" /translation="MAATVVVALVGMAFLTLLERKSLGYMQLRKGPNKLGLTGLPQPL ADAMKLLTKTTSTPTICNPIAMSVAPLLALALSALLWHLYPTTHSVSHKSLGLLLFIC ISATAVYSIMVGGWSTNSKFALLGAMRAMAQTISYEIPMILTLIFYGLISNTLDLSAF CENLSLKFKGLLIIPMTLVWLTIMLAETNRAPFDFAEGESELVSGFNVEYSGTKFAML FMAEYLNILFMGLLSSILLLNSTSWAPLFTFFFLLARGTLPRHRYDLMMGMAWESLIP ITLTFLLLASPALLMP" tRNA complement(5360..5423) /product="tRNA-Leu" tRNA 5426..5488 /product="tRNA-Val" tRNA complement(5494..5559) /product="tRNA-Ile" tRNA complement(5566..5634) /product="tRNA-Cys" tRNA complement(5634..5702) /product="tRNA-Gln" gene 6479..8245 /gene="ND5" CDS 6479..8245 /gene="ND5" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase complex 5" /protein_id="BAB62764.1" /db_xref="GI:15128588" /translation="MKLSGKSASAKSDSCTPLVWASTFLLSCFVLWFIWFGGVISTAV VLEWEFFSACGFSLSVLLLLDFLGALFSFVVCLISGCVFIFSVSYMSGDKFHSLFYSL VAAFVAAMNILILIPNLVFVLLGWDLLGIISFLLVVYYQNSVSVGAGMLTVLMNRIGD VFLVLAIGFSSSAGIWGILEVEQLAGQVVWVGVLLVGAGMTKSAQIPFSVWLPAAMAA PTPVSALVYSSTLVTVGVYFLFRHYHVLMCVNGLLPLLSKVGCLTLLMASLGACLELD IKKLVALSTLSHLGFMVYVLGVGYPVLSVFHLLSHALFKSLLFLCAGHYMHEVGCSQD IRQMSGVGWGSSPLVMACIIIGLNSLCGVPYLSGFYSKDAILEGSMTSFVGALEILCL VVGAGASCLHAMRLLLYSIFGPLGGLPLVGESGVSGFVAFPVLLLALGSICFSYVMQQ AWAEASLSFSLSFLAKVGLFLALNLGVVILATSVLGFGYSGGSLYGGFSSRLMAVKLF LSSMWFFRWWSFAVPGVWFSCGSLTVSAMEMGWMEVIGGRGVGGSFVGLGSKLWVMEG ISVLNMLRLAGGVLLVLGVHYF" tRNA complement(8280..8347) /product="tRNA-Phe" gene complement(8377..9528) /gene="cytb" CDS complement(8377..9528) /gene="cytb" /codon_start=1 /transl_table=5 /product="cytochrome b" /protein_id="BAB62765.1" /db_xref="GI:15128589" /translation="MQKPTRKSNSMLNIMNSSVYDLPAPMNLSTLWNTGSLLGLCLVI QILSGIFLAIHYTPDTNYAFSSVVHIVRDVNFGWMLRNMHATGASLFFLLAYVHIGRG IYFSSYLFTKMWLSGVVLLFTLMATAFLGYVLPWGQMSYWGAPVITNLLSVIPHFGDL LVTWIWGGFTVANGNTKPILCVPLSPSIHNPSYCMHPPHASTRKRLNNPLGLSSNTSL IPFHPFYTLKDLVGFLVFTASLMAVCMFSPLLISDPENFVPANPLSTPTHIQPEWYFL FAYAILRAIPSKMGGVLALASSILVLLMMPLTHLNTMRGMTFYPASQPLFWALAASFF VLTWLGHMPTEPPLILMSQLVTALYFSLMLSLPASGAPWDKLIFTHLNK" tRNA complement(9529..9592) /product="tRNA-Pro" tRNA complement(9592..9658) /product="tRNA-Asn" tRNA complement(9682..9747) /product="tRNA-Leu" rRNA complement(9748..11081) /product="16S ribosomal RNA" tRNA complement(11082..11144) /product="tRNA-Tyr" tRNA complement(11149..11213) /product="tRNA-Thr" tRNA complement(11216..11283) /product="tRNA-Lys" rRNA complement(11283..12149) /product="12S ribosomal RNA" tRNA 12150..12219 /product="tRNA-Arg" tRNA complement(12224..12288) /product="tRNA-Trp" tRNA complement(12291..12354) /product="tRNA-Met" gene complement(12340..13335) /gene="ND2" CDS complement(12340..13335) /gene="ND2" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase complex 2" /protein_id="BAB62766.1" /db_xref="GI:15128590" /translation="MTPLFVLLLLTSTLLTISSTNAMFMWMMLELNMLAFIPLTQTHN STTETEASIKYLIPQSFGSSLFMASVLLMPMTQHSNTLTTTALILKLGGVPLHSWFPA VMQSINPTTALILSTWQKAGPLLLLTIPHLAHTPIIISSSVMSALWGSTAGLNQTNLL KLMAFSSINHLGWLLMASLFNSLIPTIYLLAYSLTALPIFMYMKTPKIKTYVTTLTPP LNNYAQLTMVINMLSLAGMPPLSMFISKIPIIALMTQKLLLPLGLLLVSTAVSLYFYL SLSIMMTLNLNSSLQPTNEKGFQIMPIIAFTASTLFQFFHTTLMIXSICSMGKMS" tRNA complement(13345..13413) /product="tRNA-Glu" tRNA complement(13443..13508) /product="tRNA-Ser" tRNA complement(13515..13580) /product="tRNA-Ser" tRNA complement(13586..13655) /product="tRNA-Ala" gene 13747..14106 /gene="ND3" CDS 13747..14106 /gene="ND3" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase complex 3" /protein_id="BAB62767.1" /db_xref="GI:15128591" /translation="MKMVIACGVFSVLVSVAMMGLGWVLSGRYLWGVRELSSPFECGF DPVGSSRVGFSLRFFGLMILFIVFDFETVLLLPFVFWSGMGLDKGLGVVEFVGFLVIL LVGVVYEMKEGALEWGF" gene 14142..14991 /gene="CO2" CDS 14142..14991 /gene="CO2" /note="TAA stop codon is completed by addition of 3' A residues to the mRNA" /codon_start=1 /transl_except=(pos:14991,aa:TERM) /transl_table=5 /product="cytochrome c oxdase subunit 2" /protein_id="BAB62768.1" /db_xref="GI:15128592" /translation="MSRWSQLGLQEGTSVLGVEVHGLYDYSMFIIVLVFSFVAYLMLK SLCHKVTGRVYVDSQWLEVLWTVMPFWLLLALGLPSIKLLYLMDEINLPEATVKVVGH QWYWSYEYSDVRGSSYSYDSYLIPDSAMEEGYRLLEVDNRCVVPTLLTIRGLVTSDDV IHSWAIPSSAIKVDGVPGRINQVSLCFINSGVFYGQCSELCGVNHSFMPICVESVSVE VYSSWIVDNHNNVLKEMGGRPESWTWWGLLVAVVSGIGKGLYWLGSMYGMFLYYLFYY SFYVPGK" tRNA 14992..15055 /product="tRNA-His" gene 15371..>16967 /gene="CO1" CDS 15371..>16967 /gene="CO1" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit 1" /protein_id="BAB62769.1" /db_xref="GI:15128593" /translation="MYCCLRWLFSTNHKDIGSLYLMSALWWGLVGLSLSVVIRAELGH PGGLMHNDQLYYSVVTAHAFVMIFFVVMPAMMGGIGNWLVPIMLGCPDMAFPRLNNVS FWLLAGAGFLLGWSMFVEGGCGTGWTIYPPLSSSAFHSGVSVDILIFSLHLAGLSSIL GSLNFITTILGMRSDILRAERMTLLVWSVLCTAGLIVASFPVLAGAITMLLTDRNFNT SFFDPSGGGDPILFMHLFWFFGHPEVYIIIIPAFGVVSHVILYFSAKKVVFGQLGMIF AIMGIGAMGFVVWGHHMFTVGLDVDTRAYFTGATMVIAIPTGIKVFSWLSTMIGSAMP FWPAFLWSLGFVFLFTLGGLTGVILSHSSLDVVLHDTYYVTAHFHYVLSMGARVWLVF WVLLLMSGYVWGDSTPRWLKVQFYLLFLGVNLTFFPQHFLGLAGMPRRCSDYAGVYYP WNAVSSWGSILSVVSVFWFLCCVLESLVSCRSVVYGGALSVSIEWCENLFPVAFHSYS QVAMGVSAEACLMESGVCGVGTSE" ORIGIN 1 gtgaagttaa aagaaattcg taggccgttt catctggttg agataagtcc gtggccactt 61 ttttcctctg tgagggctgt ttgtcttgtt gtgggttttg taagttggct gagtggtggt 121 tctttgtgcc tcttgttttt gggggttggg cttgtttcag cagttttgtt tcaatggtgg 181 cgtgatatta tccgagagag aaaccaaggt tgacatacta ggtatgttgc tagtaatgtt 241 cgtttaggga tggttttgtt tattgtgtca gaagttttct ttttttttgg gtttttttgg 301 gcatttttta ggtgtaggtt ggtcccagga gttgaagtag ggagagtttg gccgcctgtc 361 ggcattgtcc cgttgaaccc atttgggttg cctttattaa acacagctgt gttgttgggc 421 tctggggtga gggtcacttg agcccaccat gctgtgttgg ctggggatcg gaaggaagcg 481 atgattggat tggtttttac tattatgata gggttgtatt tcacattttt gcaggcttgt 541 gagtatgtgg aatgctcttt ttctatcgcg gatagtgttt atgggtcttt attttatgta 601 atgactgggt ttcacggggt acatgtagtt atggggaccc tgattttgtc tgtagggttt 661 tttcgttgtt ttggttttgg gttttctagg gagcgacatt tggggttaga gcttggtatt 721 tggtactggc actttgtgga tgttgtttgg atttgtttgt ttttgtgcgt gtattggtgg 781 ggtggataac cctaaaagtt aaatgctgac agatattttt tcctctttgg atttttacta 841 tgtaaatgaa agtcgtaggt attttatttc ttggttaagg tattttgggt ttgtggttgg 901 agggctggct gtgtaccccc aaaagggggg gttttgggtg ggggggtctt ggtttttgcg 961 ggttgttcat tctttaatgg gggtggtttt tcagattgtt gttgattgca agggttatcg 1021 ttttggtggg tttaggttgg gctgtgttgg ggggttttga atgcttgtac tactaaactt 1081 tggtggtatg gttcctggga gtgctagttt aactaggcag ctttctgttg gcttgtcgtt 1141 ggctttattg tggtggtctt ggtctaccct aaggggttgt ttctatagtt gaaaaaggtt 1201 tttggggcat ttattaccgt taggtacgcc tgttgtgttg tgtcctttaa taatcttaat 1261 cgaaagggtt agggtattga ttcgtcctgt aactttggct gttcggttag ttgctaatat 1321 cactatgggg catcttgttt taagcttgat gggggataat ttgattgggg gggggagggt 1381 gattgtgggg gcttatggtg ttgtttgagt tctttgtttg cggtttgcag gcctatgtgt 1441 ttactttgtt ggtgagtttg tatagggctg atcaccctag gtgttaaggg gggattaggg 1501 ctatagctga ggggttaagc tttgaacggt ggaatgaaga ttgttggttc tttgaaaagc 1561 ttgtgggtac cgctcaaatg cctcaattta gtccaatgtc ttgggttttt attggtttgt 1621 ttttggtggg tgtactattg gttatttgtg ttggggtttg gtggggtggg tcaaatggtt 1681 attctgttgt gcgtttgaaa gccggcggta gttgtgctcg tttgtttgtg tggggaaaat 1741 ctttaggcgg taaagtttgg gaagttagtt tatagaaaaa catggggttg tcaaccccaa 1801 aaggcttgag ttttgcgctt ccttgatgaa acgtaccctg gacatgtttg ttgaaattgt 1861 agaagagata tacacggctt ctccgtgcgg tacggttttt gttttttttt tgtttttttt 1921 gtatatattt gtgacaattt actctttgtg ggttggtcct gaagggcata agaaagttgt 1981 cgataaaacg aaaaaggtag tgtggggtag tggtaaggca atgaaggagg cgagtgttaa 2041 ggggaggaag agagttaaaa gtgcaaagaa gaaaaagcag gagggtgccg atgtaggggg 2101 ggaggggttg ttgtcagatg ctgcggttcc ggtcaaaaag aaaaaggtga ctaagaaact 2161 taaagagcaa ggaagtaagt aagttgtaat aagcgtcggt ttagggtata atcaaagtgc 2221 ggtatgcgta gttttggttg tgctggctat ttcgtgtatt atgttccagc gtcataggct 2281 tctaatagtt ttgttggggt ttgaggtttt taggcttgtt ttgttttctt gttttatcag 2341 ggtttttggt gttatacaaa cgccagtggg gcttagtttg gtttttttgt gtttggaggt 2401 ttgcgtaatg tccgtgtgtt tagcattaat ggttaagctt gtgaggtgtg tcgggagtga 2461 ttacgtgggg gtggcttctc ttgggagtga tttttagtgt ggttcttagg atttgacttg 2521 ccttattagc tagttgattg tgtgggcaat taaggtggtg ggtagtcact tgagtttgtc 2581 agttaagtgt gcttgcaatt attcttgggg ggtttatggg ggttggggtt cccaattgta 2641 atcttggagg tgagttttgt tgtgatgaag tttcttgtgg gtttatctgg ttgtctgcgt 2701 ttattgctag tctgaggctg gtaagaagtg gggatatctt ggctagaaaa gatagtagca 2761 gtgtgttttt ggttgctgtt gttagcttat gcttggttct gtgtgtttgt tttgctacgg 2821 actctttatt tgtgttttat gtcttgttcg agtctaggct aatccctacc ctatttatta 2881 tttgtggttg ggggtatcag ccagagcgcc tgcgagccgg taaatacttg gtgttgtata 2941 tggttagggc gtctttaccc ttgctaggtt ttatccttta cacagctttt gtgtggggga 3001 gtgataggtt tgctttgctt tgtgttgtgc ggggggtatt gtcatctagc cctgggttgt 3061 ttttggtagt gactttagct tttttggtaa aatcccccat atacggtgta catatatggc 3121 ttcctaaggc gcatgtagag gctccggttg ctggttctat atttttagct ggtattcttt 3181 taaagttagg ggggtatggg ctggtgcgtt ttatgggggt cctaaatcta gttggtgtta 3241 tgtatagact tgtggtttgc ttatgcgttt ttggtggtgt tgtggcaagt gtggtttgtt 3301 gtgttcagac tgatgctaag agtttggtgg cttattcttc tgtggggcat atgggcttgg 3361 cgttaggggg gttgatgtct ggtggctatt gggggttggg cggtggctat cttttaatag 3421 ttgctcatgg cttgacttcg tgtggtatgt tttatctagt gggggaatta tacaagagct 3481 atagttctcg catgttgttt gttattcgag ggggagttgg taatttgttt ggaattaatc 3541 tgtggttggc ttttatgtgc ggatttaatg ctgctgctcc accgtctttg aggttgtgca 3601 gggaggtaat tttgtgtatc tccttgatta gctactcttt gtggttttct gttttggtgg 3661 gggctttagg gtttttatcg tgcttgtatt cgtggtcttt ttactgtaac acccagactg 3721 ggtgttaccc tgcatgggca cgtgcatttc atagcaccag gtactcatac aaccaaaggt 3781 tggtgtgtgt gtctattgtt tttcctttag tggggttgag tttatgctgc gagtatggta 3841 aatttttcta gtaattacat agtatattcc tgtgtattat gtgggatgaa tagaaaatgg 3901 ttggtcgtat tggggctttt gttcggggga gtaaagttat tgatataagt aaggctaata 3961 aaagaattgt tgcggacgtt agtaagagtt tttcatttcc attctctaaa aagaagcaga 4021 taaagttctc tggggtattg tggtgatctt gggtgttaag ggtgcttgga gttgagctgg 4081 ttgagtgagc cagtaaaaag cctgggatta gggtcgtggc tagatgagct agttgtggtt 4141 ttaattgaaa aattccgttg ggggatagcg acgagatata ggtaaatatc actagtattc 4201 cccccactat gactatgtat agtatgtagg cgtatcatgt ggtgatatgg gcgagggtta 4261 aggaaatagt agtagctaat agtagaactt tgacggttaa tactagtggg tgggcagaaa 4321 agacactgct gcagagtaaa gtgatcctta tggacaaaaa aattattagt gttatgtata 4381 ctgaccttca taggtctttc tgcttggaag gcagctgtac aggagtaggg atactatcag 4441 tatcggttta gggtatcaag agggctgggc tagcaagtaa aaggaatgtc agagtgattg 4501 ggataaggct ttctcaagct atgcccatta ttaggtcata tcggtggcgt gggagtgtgc 4561 ctcgtgccag caaaaaaaag aaggtgaaga ggggtgctca gcttgttgag ttaagaagca 4621 ggatacttga gagaagtcct ataaaaagaa tgtttaagta ctctgccatg aagagtatgg 4681 caaattttgt accagagtac tccacattga acccagacac cagttctgac tccccttctg 4741 cgaagtcaaa tggtgcgcgg tttgtttctg ctagtatgat tgttaatcaa accagggtta 4801 ttgggatgat gagcagccct ttgaatttta gtcttaagtt ttcacaaaag gctcttaggt 4861 ctaacgtatt tctgatgagt ccgtagaaga ttagggttag aattatcgga atttcataag 4921 aaattgtctg ggctattgct cgtatagccc ctagaagtgc gaattttgaa ttggttcttc 4981 atcccccgac tataatagag taaactgccg ttgctgagat gcagataaac aatagtaggc 5041 ctaatctttt gtgtgacaca gagtgcgtag ttgggtatag gtgtcagagt aaagcggata 5101 aggcgagggc tagtaatggt gctactgaca ttgcaattgg gttgcagatt gttggtgttg 5161 atgtagtttt ggttagcagt tttatagcgt ctgctagagg ttgagggagg ccagtcaaac 5221 caagtttatt ggggcctttt cgaagttgta tgtagccgag tgatttgcgc tctagcaagg 5281 ttaagaacgc tattccgacc agtgctacaa ctacagtagc tgctattttg ggttgtggtg 5341 tggggtcatt gtgacatgtg gagggagagt taagcctcat tgttaggtct taggcctaaa 5401 gcattgtatt tctgccatcc ctcatgttag ggggccaaag ccagtttttt ggtgtaagca 5461 agatatatta tgtgtatatt accctaatca ggtaagtgtc agaggaacta cctcatgttt 5521 aacctcatca aagtaatccg ttcgtgccgg cgtgacactg aggggaggtc ctggccagaa 5581 tggcttcggt aaagttgcag tttactatat tatgttactt tatactacag gacttgtggg 5641 cggagctgtt gacttcctct ttgtaactca aatttacatg tgcgtagtaa cactagctca 5701 cagtgcatga tcttctgacc aagtctagta agttagttta caaatatttg tgtaatcttt 5761 aggaatttaa acctttacag taaggtgagg aatcaggggg gggggttaaa aggggggtta 5821 aggttaagat tagtagaggt ataggagtta aggagagttc ctttggtaag gtagtttaaa 5881 gaataaagag aagacagtag gttaaggtta gttgagttcc taggattagg catctttcat 5941 tagaggtata ggagttaagg agagttcctt tggtaaggta gtttaaagaa taaagagaag 6001 acagtaggtt aaggttagtt gagttcctag gattaggcat ctttcattag aggtatagga 6061 gttaaggaga gttcctttgg taaggtagtt taaagaataa agagaagaca gtaggttaag 6121 gttagttgag ttcctaggat taggcatctt tcattagagg tataggagtt aaggagagtt 6181 cctttggtaa ggtagtttaa agaataaaga gaagacagta ggttaaggtt agttgagttc 6241 ctaggattag gcatctttca ttagaggtat aggagttaag gagagttcct ttggtaaggt 6301 agtttaaaga ataaagagaa gacagtaggt taaggttagt tgagttccta ggattaggga 6361 tctttcatta gaggtatagg agttaaggag agttcctttg gtaaggtagt ttaaagaata 6421 aagagaagac agtaggttgt ggtccttcag ttgtacccgc aggttccctt gctaggtgat 6481 aaagttgagt ggaaaaagtg cttcagcaaa aagtgatagc tgtactccgt tggtgtgggc 6541 tagcacgttc cttttgagtt gttttgtttt atggtttatt tggtttggtg gggttatctc 6601 tactgctgtt gtcttagagt gggagttttt tagtgcttgt gggttttctt taagggtttt 6661 gcttttgtta gattttttag gggctttgtt ttcttttgtg gtttgtctga tcagtggttg 6721 tgtttttatc tttagggtta gatatatgag aggggataag ttccacaggc ttttttactc 6781 tttggttgct gcttttgtag cggctataaa cattttaatc cttatcccga atttggtgtt 6841 cgttttacta gggtgggatc ttttaggtat tatttctttc ttgttggttg tttattacca 6901 gaatagtgta tcggtggggg cagggatatt gactgtgctg ataaatcgta ttggggatgt 6961 ttttttagtg ttagctattg ggtttagctc tagggctggt atttggggga ttttggaggt 7021 tgagcagctt gctgggcaag ttgtttgggt gggggttttg ttggttggtg ccgggataac 7081 caagagggct caaattccct tttcggtgtg gttgccggct gctatggcag ccccgacacc 7141 tgtttctgcg ttagtgtact cttctacctt ggttactgtg ggggtttact ttttgttccg 7201 gcattatcat gttttgatgt gtgtgaatgg cttgcttcct ttattgagaa aggttgggtg 7261 tttaactttg ttaatagcta gtttgggggc ttgtcttgag ctggacatta aaaagttagt 7321 ggctttgtct actttaaggc atttggggtt tatggtctat gttttagggg ttgggtatcc 7381 ggttcttagg gtttttcact tacttaggca tgccctgttt aagtccttgc tgtttctttg 7441 tgcggggcat tatatgcatg aggttggttg ctcgcaagat attcgtcaaa tatctggtgt 7501 tgggtggggc aggtcacccc tagtgatagc ttgcattatt atcgggctta attccctttg 7561 cggggtacct tatctgagtg ggttttactc aaaggatgct attcttgaag ggtctatgac 7621 ttcttttgtt ggtgctttag agattctttg tttggttgta ggtgctgggg ctaggtgtct 7681 gcatgcaata cggctcttgt tgtatagaat tttcggacca cttggggggc tgccgttagt 7741 gggggagtct ggtgttaggg ggtttgttgc gttccctgtt ttattgttgg ctcttgggag 7801 gatttgcttt aggtacgtga tgcagcaagc ttgggctgaa gcttctttaa ggttcagttt 7861 gaggtttttg gccaaggttg gattgttttt ggccttgaat ttgggggtgg ttattttggc 7921 tacaagagtg ctaggttttg ggtacagcgg gggtaggctg tatgggggtt tctccagacg 7981 acttatggct gttaagttgt ttttgaggag aatgtgattc tttcgttggt ggagttttgc 8041 tgttcccggg gtttggttta ggtgcgggtc tcttaccgtg agggctatag aaatggggtg 8101 gatggaggtg attgggggtc gtggggttgg tggcaggttt gtggggttgg ggtcaaaact 8161 ctgggttata gaggggatta gtgttttaaa catattgcga cttgccggtg gggttttatt 8221 agtattgggt gtgcattatt tttaaagttt aattgctggt ggtttagggg atggtcggat 8281 gggagcgagt ttgttctatc ttaacatttt cagtgttgtg ctttagtggg gtttaagcta 8341 cacccccgcg cccctttttt gttaaggtta attgggttat ttatttagat gggtgaaaat 8401 aagtttgtct catggggcgc ccctggcggg gaggcttagc attagagaaa aatatagggc 8461 agttacaagc tgccttataa ggataagggg cggttcagtc ggtatgtggc cgagtcatgt 8521 taacacaaag aaggatgctg ctaaggctca aaataatggt tggcttgctg ggtaaaaggt 8581 catgccacgt attgtgttta gatgtgtaag tggtattatt agaaggacta ggattgaaga 8641 tgccaaggca agcactccgc ccatttttct tgggatggca cgtagaatgg cgtaggcaaa 8701 cagaaagtat cactcaggtt gaatgtgtgt tggtgtggat aggggattgg ctgggacgaa 8761 gttttctggg tcagagatta atagggggga gaatatacat accgctatga gactagcggt 8821 gaaaactagg aatccgacga ggtcttttag ggtgtagaat gggtgaaacg ggataagaga 8881 tgtgttgctg gatagcccta gggggttgtt gagccgtttt cgtgtagaag catgaggtgg 8941 atgcatacaa tagctaggat tgtgaatgga aggagaaagt ggaacacaaa gaatcggttt 9001 agtgttgccg ttggcaacag taaatcctcc tcagattcat gttactagaa ggtcgccgaa 9061 atgcgggatg acagacaaaa ggttggtgat tactggtgct ccccaataag atatttgccc 9121 ccacggaaga acgtagccga ggaaggctgt ggccattaag gtaaagagga gtactacacc 9181 tgatagccat attttggtaa acaagtaaga agagaagtag attcctcggc caatgtgcac 9241 gtaggcaagt agaaaaaata aggaggcccc tgtggcatgt atatttcgca gcattcagcc 9301 aaagtttacg tcacgaacga tgtggactac ggagctaaag gcgtaatttg tatcgggtgt 9361 gtaatggatt gccaaaaaaa tcccagaaag gatttggatt actaagcata gccccaagag 9421 tgagcccgtg tttcatagag tggataggtt tattggggct ggtaggtcgt aaaccgatct 9481 gttcatgata tttagtattg agtttgattt acgggttggt ttttgcactc agaaagttaa 9541 cttgttaaat ctaaagctcc caaagctttt attttttata aactactctc tgaaagtaaa 9601 tgaaattttg gttcatagcc tgctagttaa cagctagctg cttgagagct tttactttag 9661 ttttggcgag taaatcgagg tgttgcaagt agatttaagg tctttttttt aagcctaaat 9721 taaaggtatt gagtatacta acctgcagac tagtaaatta gcggttagcg atgtggactt 9781 tgtcatgttt gtgttacttg aagagattta gtagagcact tgtgcaagtg tgcctctttg 9841 ggtcctttcg tacaataaag agtgtggttg tgagggaaaa gatagaatcc aacctagctc 9901 tcgccggtct taactcagct cgtgtagggg gtttgcagtc gaacagactg gcagatgttc 9961 ttagtggctg cgccaagttg ctttccctaa gccaacatcg aggtcgcaaa cccagctttc 10021 aatgcgtact cttaagctgg attacgctgt tatccccggg gtaactgcgg tatgtgcctt 10081 agcaagtttt ttattggttt tagtgatccg ttgtggaggt tttatctact ccaaggttgc 10141 cccaaccaac ctcattcctt agcaacttgt gttggtaggc ttaaagttat gaggggagtt 10201 ccgcggggtc tttttgtctt tttccttcat ctaagtcttt tcacttagag gaaaagttat 10261 ctttccgtgg gtgatacagt tcttccctgt tttgcctttc actggctcct aattagagag 10321 ctgtttatta cgctacctta gcacgctcac gctaacgcgg ccatttaata gttaaatcat 10381 ggggcaggca gtatctctta tgggtggggg tcaagagacg atgtttttgg taaacaggca 10441 gggtaggatt ttgccgagtt cattactcac ggtggttact ctgggatgta gtttgatgag 10501 tataacatgc agggtgctct gggagctgat ttatgatact aatagtttgc cgtttcgttg 10561 aagcatttat tgcgctgcag ggttccttgg tgggtagagt tgagggtgaa ttttggtggg 10621 aaagttcatt tcctgtaacg gattttgtgg gctgttttta ggcctattcg cgaaggtttg 10681 gttatgtgta cttctaaact ctagcgagct tgtccccgct agattttctc caccaaaggg 10741 tttcttttat gcttctggtg gggggcactt atatgccttt gaggaacaac cagctatcag 10801 gcgattcgtc aggtattttg cttctattac cagctgtact ttaagtaatg acacactaat 10861 ggttattgct ggtaatagct cctcgctttt cgggggacaa cataagggtt ggtggggttg 10921 ttgcaactac ctgatgcaaa aggtagggga attaagccat tcttgtgaat agaggggata 10981 ggcccttgcg gttgtgtggg attttaagtt gtgtgggttt gtacttatgt atgcgtgggt 11041 ttactttaag gacagtcgtg ttcgagctta ctcgggttct gtgcaatggg cttttggggc 11101 cattgaaaga tttacagtct tttgcctaag tcggccactt ttgcgtaagc cttagggctt 11161 aagccttctg tgatttacaa gaccactgct tggtaagtat aagcttcatt agggcatcca 11221 tgaagtttgt gtaactgttt ttaagttaaa agcttaatgc ctgatagtct cggccatcat 11281 gggtttagtc taggggcaac ttccgatacc cctactgtgt tacgacttat cccgatttaa 11341 gtatcgggag tgacgggcga tttgtgcgca ttctagttct tgttcaggct gtagtagtgt 11401 tgtaacctta cttttaagtc ctcctttata gcagaaattt cattctcttt tggatgcttg 11461 ataggcattt gtatcccatg agctgctttg tgttggctat atgtcacctg tgttagcaag 11521 atgtagtctt gggtgtctcc ttttattttg ttggtgtgca gacttaaaac ggccatacat 11581 aagctgttaa ctaacaaagc ttcggtgttc gtgggttatc gaattaagcc acaggatccc 11641 ctaataaggt gtagaatacc gccacgcttt ttaagtttgg aactttcgtt tttagagttt 11701 ggagtgttgg gccacgcgat aggcgggtat ctaatccgcg tcttgtaggt gtggtttgtt 11761 agggtacgtt ttggggtgat gacttgtttg ggtatactta ttttgttaca aatttcactt 11821 ttgggttgta agattgaagt cagaggtggg tttggtacct ttatgtcaac gtgtgaatta 11881 attccgagtt ggggtctaac cgcgactgct ggcacccctt tggtcactat aagtttacca 11941 ttcttgcggc ctagtttcct agcttaggca atatagctca ttggtgttgc gggcaagtgc 12001 ctttggcggt agttttgtcc aatgttcgaa tgtgtattac tatgtgttta acagcgttac 12061 tacacagggg tacgattcgc aagccactta gattaccata tgaagtttga cggcaataat 12121 taatctgaca tcagagcgaa gtgttctaga gcaaagggaa ctcgatgaga agttcgtagt 12181 atgggccgaa accatagtgc tgttgtagct tcctttgggc tctaagggct ggtttaggga 12241 ttaccaatta aaactttgaa ggcttttagt tttattagct taagcccttg tggcgagaga 12301 gtgtgatcat ttttgggtta tgggcccact agcttagagt tagcttatct tacctataga 12361 acagatgctg ntaatcataa gggtagtgtg aaagaattgg aaaagtgtag atgctgtgaa 12421 ggcgatgatg ggcatgattt ggaagccttt ctcgtttgtg ggttgtagag atgagttgag 12481 gttaagggtt attataatag atagagaaag gtagaaatac agactgactg cggtgctaac 12541 gaggagtagt cctagtggta ataggagctt ttgtgttatt aaggcaataa tcgggatttt 12601 gctgataaac atagatagtg gtggcattcc cgctagggaa agtatattga taaccatggt 12661 taattgtgca taattgttaa gaggtggggt tagggttgtg acgtaggttt tgatttttgg 12721 ggtttttatg tacataaaaa ttgggagtgc tgttagtcta taggctagca ggtagatggt 12781 tgggattagt gagttaaaca gtgaggctat gagtagtcat cccaggtgat tgatagatga 12841 gaaggctatt agtttaagaa gatttgtttg gtttaagcca gctgtacttc ctcatagtgc 12901 tcttataact cttgaggaaa taataatggg tgtgtgtgcc aggtgaggga ttgtgaggag 12961 aaggagtggt cctgcttttt gtcatgtgct taggataaga gcagttgttg ggttaataga 13021 ttgtatgaca gctggaaatc agctgtgtag cggaactccg cctagtttta ggatgagggc 13081 tgtggtagtt agggtattcg agtgttgggt tattggtata agtaggacgg aggctatgaa 13141 tagccttgag ccgaaggatt gtgggatgag atacttgatg gacgcttctg tctctgttgt 13201 ggagttgtgg gtttgggtaa gcgggatgaa ggccagcata tttaattcta gcattattca 13261 cataaatata gcgtttgttg atgaaattgt aagcagggtt cttgttagga gtaaaagtac 13321 aaagagaggg gttatggtct tcgtaagtta gctactgtta gtcagcattt tcggcttgaa 13381 agtccgacgt gttggggttt ataccaagct aatgtataaa gagcctaggt tggttagaga 13441 agagaagcaa aaggagttaa acctcttttt ctttggttag aagcctaaga ttgattatcg 13501 atcgcttctc tggaagaaga tggacgagtc gaacgtcctt cgttctggtt tcaagtcaga 13561 gtgttaaaag ccttatcttc tgtttggggt tgaggggcac gtttgagccc tattgttagg 13621 tgcaagttaa ctcttttagg ttaaagtact caaccgtaag taaacgcttt atggttgttt 13681 atttattggt gtggtgagaa gaataaataa agagttagtt agtaggagga ggaggttggt 13741 ggaggaatga aaatggtgat tgcttgcggt gttttttctg ttttggtaag ggtggcgatg 13801 atgggcttag ggtgagttct tagtggtcgg tacttgtggg gtgtgcgtga gctaagaagt 13861 ccgtttgagt gtgggtttga tccagttggg tcttctcggg ttgggttttc tttgcggttt 13921 tttgggttaa taattttgtt cattgtcttt gactttgaga cagtgttgtt gttgcctttt 13981 gtgttttgat ccggtatggg gttggataag gggcttgggg tagttgagtt cgtggggttt 14041 ttggtgattc ttttggttgg ggttgtctat gagatgaaag agggtgcttt agagtggggg 14101 ttttaggggt taatgccccg gccgcgtgtt ggtttagcaa aatgagccgt tgaagtcagc 14161 ttgggttgca ggaaggtact agtgttttag gtgtagaggt tcatgggcta tacgattata 14221 gcatgtttat tattgttttg gtttttaggt ttgtagcgta tcttatgcta aagagtttgt 14281 gccacaaggt aaccggtcgg gtttatgtgg ataggcagtg gttggaagtc ttgtgaaccg 14341 ttataccatt ttggcttttg ttagccttag gcttacctag gattaagctg ctttatttga 14401 tggatgagat caaccttcct gaagccactg ttaaagtggt ggggcatcag tggtattgaa 14461 ggtatgagta ttctgatgtt cgcggtagta ggtacaggta tgactcctac ttgattccag 14521 attcagcaat agaggagggt tatcggcttc tggaggttga taatcggtgt gttgttccga 14581 ctttgttgac tattcgaggg ttagttacgt ctgatgatgt aattcactcg tgggccattc 14641 cttctagggc tattaaagtg gatggggttc ctgggcgtat taatcaggtt agtttgtgtt 14701 tcattaattc tggtgttttt tatgggcaat gtagtgaact gtgcggggtt aaccactctt 14761 ttatacctat ttgtgttgag tctgtttcgg tagaagttta taggagctga attgttgata 14821 accataataa tgtgttgaaa gagatggggg gacgacctga aaggtgaact tggtggggtc 14881 tgttggttgc tgtagtaagg gggattggga aaggattgta ttggcttggg aggatatacg 14941 gtatgtttct ttattattta ttttactata ggttttatgt tccgggtaag tttgttgttg 15001 ttgggagttg aggatttgtg tggtgagtca ttaggagttc cgtgattgtt gtaaagtggt 15061 tggtgtggtt tgggaattct cctatggagg ctgttaggta tgctgttggg tgtttggttg 15121 ctaatatttg gagtgttgtt gtgttttttg tgactagtcc tgtagtggct gtttggtggc 15181 ttgttaaggg gttttgtggg gttgtggttg gttttgtttg gttttctctc tatgcttttg 15241 aggctgtttt gaatagttta tctaggttta ctggggatgg gtttcaggaa tttgttgtgg 15301 ataatgtgag gtggaatact aagaagtttc tttgaattct gtcaaatcga tataagggtg 15361 ggtagcggtg atttattgct gtttgcgttg actgttttcc actaaccata aggatattgg 15421 aagtttatat ttgatatcag ctttgtgatg gggtttggtg ggtttgtctt taagggttgt 15481 gattcgggcg gagcttggtc atcctggcgg attaatacat aatgatcagt tatactactc 15541 tgtagttacg gctcatgctt ttgtaataat tttttttgtt gttataccgg ctataatggg 15601 gggtattggg aattggcttg ttccgattat gttggggtgt ccagatatag cctttcctcg 15661 tttgaacaat gtgaggtttt ggttattggc aggtgctggg tttttgttgg ggtgatctat 15721 gtttgtggag ggtgggtgtg gtactgggtg aactatttac ccgcctttgt cgagtagtgc 15781 ttttcactca ggggtttctg tggacattct tatcttttct ttacatctgg ctggtctttc 15841 ctctatttta gggtcactaa attttattac gactatttta gggatgcgaa gggatatctt 15901 acgggcagag cgtatgactt tactcgtttg gtctgtgcta tgcactgcgg gtttgattgt 15961 ggcatctttt ccggtattag caggggccat caccatgttg ctaacagatc gtaattttaa 16021 tacctctttc tttgatcctt cggggggggg agatccaatc ctttttatgc atttgttttg 16081 gttttttggg catccggagg tttatatcat tattatccct gcttttgggg ttgtttcgca 16141 tgtgattttg tacttttctg ctaaaaaggt tgtttttggt caattaggta tgatttttgc 16201 aattataggt attggggcga tggggtttgt tgtttggggg catcatatgt ttactgtggg 16261 gttggatgta gatactcggg cttactttac tggggctacg atggtaattg ctatccccac 16321 tgggattaag gtttttaggt gacttagaac aatgattggt tctgctatgc cgttttgacc 16381 tgcgtttttg tggtctttgg ggtttgtttt cttattcact ttaggtggtc ttactggggt 16441 gattttgtcc cactcttctt tggatgttgt tctgcacgac acttactatg ttactgcaca 16501 ctttcattat gtcctaagaa tgggggcccg tgtttggctt gttttctggg ttttgttatt 16561 gatatccggt tatgtttggg gtgactctac accccgttgg cttaaagtgc agttttattt 16621 actttttttg ggggttaatc ttactttttt ccctcagcat tttttggggc ttgctggtat 16681 accccgtcga tgttctgatt atgctggtgt ttattatccg tgaaatgctg tttcttcttg 16741 gggatcgatt ttgtctgtgg tgtctgtgtt ttgattcttg tgttgtgtgt tggagtcgct 16801 tgtttcttgt cgtagcgtgg tttatggcgg ggcattaagt gtgtctattg agtggtgtga 16861 gaatttgttc cctgtggctt ttcactcgta taggcaggtt gctatgggcg ttagagcaga 16921 ggcatgtttg atggaaaggg gggtttgtgg ggtgggtacg agagaag // |
6楼2013-04-23 09:19:13
2楼2013-04-22 09:37:32
3楼2013-04-22 10:24:48
【答案】应助回帖
★ ★ ★ ★ ★ ★ ★ ★ ★ ★
感谢参与，应助指数 +1
wizardfan: 金币+10, BioEPI+1, 感谢热心的回答 2013-04-24 06:31:58
感谢参与，应助指数 +1
wizardfan: 金币+10, BioEPI+1, 感谢热心的回答 2013-04-24 06:31:58
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GO to "http://www.ncbi.nlm.nih.gov/genomes/OrganelleResource.cgi?opt=organelle&taxid=6544" click "Download"-> "download the list of accessions"-> fileA GO to "http://www.ncbi.nlm.nih.gov/sites/batchentrez" upload the fileA and got the all GBk webpage click "send to" to save file with "Genebank full " -> file B install perl and bioperl package run "perl GetCds.pl fileB FileYouWanted" GetCds.pl : #!/usr/bin/perl use Bio::SeqFeatureI; use Bio:  erl;use Bio::Seq; my %species; @seq=read_all_sequences("$ARGV[0]",'genbank'); $flag=1; foreach $seqobj (@seq) { @features=$seqobj->get_SeqFeatures(); foreach $feat (@features) { if($feat->primary_tag eq 'CDS'){ print "$feat\n"; @name=$feat->get_tag_values('gene'); $name=join "",@name; open OUT,">>$ARGV[1]"; print OUT '>'.$seqobj->desc().$name."\n"; print OUT $feat->seq->seq()."\n"; close OUT; } } } |
4楼2013-04-23 07:06:38