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zh1987hs

金虫 (著名写手)

分子模拟新手

[交流] 【求助】AMBER11安装问题

在ubuntu上安装AMBER11出现问题,
在执行./configure gnu之后出现
XX@XX-desktop:~/src/amber11/AmberTools/src$ ./configure gnu


Your AMBERHOME environment variable should be set to /home/XX/src/amber11
(这里是说我的AMBER环境变量不对?可是我设的和他写的是一样的)
Could not find the X11 libraries; you may need to edit config.h
   to set the XHOME and XLIBS variables.
Warning: the X11 libraries are not in the usual location !
    To search for them try the command: locate libXt
    On new Fedora OS's install the libXt-devel libXext-devel
    libX11-devel libICE-devel libSM-devel packages.
    On old Fedora OS's install the xorg-x11-devel package.
    On RedHat OS's install the XFree86-devel package.
    On Ubuntu OS's install the xorg-dev package.
(是说我要下载XORG-DEV的库吗?)
    For the moment Amber will be configured not to build XLEaP.

Obtaining the gnu suite version:
      gcc -v
The version is 4.4.1

Testing the gcc compiler:
     gcc  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
OK

Validating the C++ compiler version:
     g++ -v
The version is
[: 1340: -lt: unexpected operator
OK

Testing the gfortran compiler:
     gfortran -O0 -o testp testp.f
./configure: 1340: gfortran: not found
./configure: 1340: ./testp: not found
Unable to compile a Fortran program using gfortran -O0
We will be unable to compile sqm
(这里的错误是什么意思?gfortran本身的安装问题?)
Testing mixed C/Fortran compilation:
     gcc  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
     gfortran -O0 -c -o testp.f.o testp.f
./configure: 1340: gfortran: not found
     gcc -o testp testp.c.o testp.f.o -lgfortran
gcc: testp.f.o: No such file or directory
./configure: 1340: ./testp: not found
WARNING: Unable to compile mixed C/Fortran code.

Testing pointer size:
     gcc  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_pointer_size test_pointer_size.c
Detected 32 bit operating system.

Testing flex:
OK

Configuring NetCDF; (may be time-consuming)

    Error: NetCDF configure returned 1
    NetCDF configure failed!  Check the netcdf_config.log file.
    Continuing but NetCDF will be skipped.
(这个是必须安装的吗?)
Configuring fftw-2.1.5; (may be time-consuming)

    Error: fftw configure returned 1
    fftw configure failed!  Check the fftw2_config.log file.
这是出错信息,请指教
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gromacs

银虫 (正式写手)


ghcacj(金币+1):谢谢 2010-09-14 23:06:19
zh1987hs(金币+1): 2010-09-15 08:16:19
我怎么觉得你amber11有问题,是正式版么
"I was taught at school that you should never start a sentence without knowing the end of it." GROMACS讨论区:http://www.mdbbs.org/forum-39-1.html
2楼2010-09-14 22:24:28
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zh1987hs

金虫 (著名写手)

分子模拟新手

引用回帖:
Originally posted by gromacs at 2010-09-14 22:24:28:
我怎么觉得你amber11有问题,是正式版么

是滴,没经过代理的
3楼2010-09-14 23:08:26
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snoopyzhao

至尊木虫 (职业作家)

zh1987hs(金币+2): 2010-09-15 08:16:15
你是安装 Amber 还是 Amber tools?
4楼2010-09-15 08:05:41
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zh1987hs

金虫 (著名写手)

分子模拟新手

引用回帖:
Originally posted by snoopyzhao at 2010-09-15 08:05:41:
你是安装 Amber 还是 Amber tools?

这一步应该是还在安装AMBERTOOLS
5楼2010-09-15 08:16:07
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mumun

新虫 (小有名气)


小木虫(金币+0.5):给个红包,谢谢回帖
楼主,网购的是吗?请教一下具体操作?
6楼2011-12-21 11:05:25
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