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ifgovh

½ð³æ (СÓÐÃûÆø)

[ÇóÖú] vaspÔËÐб¨´í ÒÑÓÐ3È˲ÎÓë

¸÷λ´óÏÀ ÎÒ°²×°¸÷Öֽ̳Ì×°ÁËVASP£¬°ÑËĸöÊäÈëÎļþ·ÅÔÚÒ»¸öÎļþ¼ÐÄÚ£¬ÔÙ°Ñvasp¸´ÖƵ½Õâ¸öÎļþ¼ÐÖС£
Ö´ÐÐÈçÏ£º
[wangch@fat01 vasp.5.2]$ mpirun -np 16 vasp
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
problem with execution of vasp  on  fat01:  [Errno 2] No such file or directory
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shuyuan8239

ľ³æ (ÕýʽдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï
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liliangfang: ½ð±Ò+1, лл½»Á÷ 2014-09-29 07:45:27
ÔÚÂÛ̳ÖÐѯÎÊÀàËÆµÄÎÊÌâºÜ¶à£¬¸÷²»Ïàͬ¡£
»¹Ç뽫INCAR KPOINT POSCARÈý¸öÎļþÖеÄÊý¾Ý¸´ÖÆÉÏÀ´(²»ÒªÉÏ´«Îļþ)£¬×¢ÒâÌõÀíÐÔ£¬¼ò½éÏêʵ¡£
ÕâÑùµÄ»°·½±ã´ó¼Ò°ïÄã½â¾öÎÊÌâ¡£
2Â¥2014-09-25 08:45:48
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

ifgovh

½ð³æ (СÓÐÃûÆø)

ÒýÓûØÌû:
2Â¥: Originally posted by shuyuan8239 at 2014-09-25 08:45:48
ÔÚÂÛ̳ÖÐѯÎÊÀàËÆµÄÎÊÌâºÜ¶à£¬¸÷²»Ïàͬ¡£
»¹Ç뽫INCAR KPOINT POSCARÈý¸öÎļþÖеÄÊý¾Ý¸´ÖÆÉÏÀ´(²»ÒªÉÏ´«Îļþ)£¬×¢ÒâÌõÀíÐÔ£¬¼ò½éÏêʵ¡£
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incar
system= Clean relaxation calculation
#Startparameter for this run
ISTART=0
ICHARG=2
ISPIN=2
PREC=Medium
ENCUT= 450
GGA= PE
ALGO=FAST

#Electronic relaxation
NELM=400; NELMIN=10;
NELMDL=8
WEIMIN=0
LREAL=AUTO
EDIFF=0.1E-3
ISMEAR=0; SIGMA=0.02

LMAXMIX=4

AMIX     = 0.2
BMIX     = 0.00001
AMIX_MAG = 0.8
BMIX_MAG = 0.00001

#Ionic relaxation
EDIFFG=-0.02
NSW=500
IBRION=2
ISIF=3
ISYM=0
POTIM=0.3

#Write flag
LWAVE=.F.
LCHARG=.F.


kpoint
con0.0
0
Gamma point shift
4 4 4
0 0 0

poscar
Si
1.0
        5.4306998253         0.0000000000         0.0000000000
        0.0000000000         5.4306998253         0.0000000000
        0.0000000000         0.0000000000         5.4306998253
   Si
    8
Cartesian
     0.000000000         0.000000000         0.000000000
     0.000000000         2.715349913         2.715349913
     2.715349913         2.715349913         0.000000000
     2.715349913         0.000000000         2.715349913
     4.073024869         1.357674956         4.073024869
     1.357674956         1.357674956         1.357674956
     1.357674956         4.073024869         4.073024869
     4.073024869         4.073024869         1.357674956


ʵ¼ÊÎÒÖ»ÊÇÏë²âÊÔÒ»ÏÂÎÒµÄvaspÊDz»ÊÇÕæÕý±àÒë³É¹¦¿ÉÓÃÁË ÓÃÁËÒ»¸öºÜ¼òµ¥µÄSi
3Â¥2014-09-25 12:02:21
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

Jiansh

гæ (СÓÐÃûÆø)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï
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liliangfang: ½ð±Ò+1, лл½»Á÷ 2014-09-29 07:45:37
Â¥Ö÷ºÜ¿ÉÄÜû±àÒë³É¹¦....
ÕâÖÖÇé¿ö£¬ÏÈÊÔÊÔwhich vasp£¬»òÕßÖ±½ÓvaspÃüÁîһϣ¬¿´¿´£¬Ïȱð²¢ÐÐ....
Ò»°ãÀ´ËµÊäÈëÎļþÓÐÎÊÌ⣬²»»á³öÏÖÕâÀà´íÎó
ѧÊõÍø£¨www.scholarnet.cn£©±ü³ÐÒ»ÇÐΪѧÊõ¹¤×÷ÕßµÄÀíÄ½ß³ÏΪ¹ã´ó¿ÆÑй¤×÷ÕßÌṩÓÅÖʵķþÎñ¡£
4Â¥2014-09-25 12:23:53
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

Jiansh

гæ (СÓÐÃûÆø)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï
liliangfang: ½ð±Ò+1, лл½»Á÷ 2014-09-29 07:45:43
ÁíÍ⣬ÄãÐèÒª°Ñvasp¸´ÖƵ½binÖУ¬ÕâÑùÖ±½Óµ±ÃüÁîÓ㬻òÕßÔÚ~/.bashrcÖÐÌí¼Ó;¾¶

½¨Ò黹ÊǸ´ÖƵ½binÖÐÊÔÊÔ
ѧÊõÍø£¨www.scholarnet.cn£©±ü³ÐÒ»ÇÐΪѧÊõ¹¤×÷ÕßµÄÀíÄ½ß³ÏΪ¹ã´ó¿ÆÑй¤×÷ÕßÌṩÓÅÖʵķþÎñ¡£
5Â¥2014-09-25 12:27:05
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

ifgovh

½ð³æ (СÓÐÃûÆø)

ÒýÓûØÌû:
4Â¥: Originally posted by Jiansh at 2014-09-25 12:23:53
Â¥Ö÷ºÜ¿ÉÄÜû±àÒë³É¹¦....
ÕâÖÖÇé¿ö£¬ÏÈÊÔÊÔwhich vasp£¬»òÕßÖ±½ÓvaspÃüÁîһϣ¬¿´¿´£¬Ïȱð²¢ÐÐ....
Ò»°ãÀ´ËµÊäÈëÎļþÓÐÎÊÌ⣬²»»á³öÏÖÕâÀà´íÎó

ÊäÈëwhich vasp
[wangch@fat01 vasp.5.2]$ which vasp
/usr/bin/which: no vasp in (/opt/intel/composer_xe_2011_sp1.10.319/bin/intel64:/usr/local/maui/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/bin:/opt/intel/composer_xe_2011_sp1.10.319/mpirt/bin/intel64:/home/wangch/bin)

ÕâÑùËãÕý³£Âð£¿
6Â¥2014-09-25 18:38:39
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

ifgovh

½ð³æ (СÓÐÃûÆø)

ÒýÓûØÌû:
5Â¥: Originally posted by Jiansh at 2014-09-25 12:27:05
ÁíÍ⣬ÄãÐèÒª°Ñvasp¸´ÖƵ½binÖУ¬ÕâÑùÖ±½Óµ±ÃüÁîÓ㬻òÕßÔÚ~/.bashrcÖÐÌí¼Ó;¾¶

½¨Ò黹ÊǸ´ÖƵ½binÖÐÊÔÊÔ

¸¨Öúµ½binÖÐ
[wangch@fat01 vasp.5.2]$ sudo cp vasp /bin
ÔÙÊäÈëwhich vaspÌáʾ
[wangch@fat01 vasp.5.2]$ sudo cp vasp /bin
È»ºóÎÒÓÖÔËÐÐÁËÒ»´ÎÌáʾÕâ¸ö
[wangch@fat01 vasp.5.2]$ cd /data/wangch/test/
[wangch@fat01 test]$ mpirun -np 16 vasp
mpiexec_fat01: cannot connect to local mpd (/tmp/mpd2.console_wangch); possible causes:
  1. no mpd is running on this host
  2. an mpd is running but was started without a "console" (-n option)
In case 1, you can start an mpd on this host with:
    mpd &
and you will be able to run jobs just on this host.
For more details on starting mpds on a set of hosts, see
the MPICH2 Installation Guide.
[wangch@fat01 test]$
7Â¥2014-09-25 18:42:51
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

ifgovh

½ð³æ (СÓÐÃûÆø)

ÒýÓûØÌû:
5Â¥: Originally posted by Jiansh at 2014-09-25 12:27:05
ÁíÍ⣬ÄãÐèÒª°Ñvasp¸´ÖƵ½binÖУ¬ÕâÑùÖ±½Óµ±ÃüÁîÓ㬻òÕßÔÚ~/.bashrcÖÐÌí¼Ó;¾¶

½¨Ò黹ÊǸ´ÖƵ½binÖÐÊÔÊÔ

Ö®ºóÎÒ°´ÕÕÌáʾÊäÈëmpd &
ÔÙÔËÐÐ
[wangch@fat01 test]$ mpd &
[1] 175272
[wangch@fat01 test]$ mpirun -np 16 vasp
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
vasp: error while loading shared libraries: libmpi_f90.so.0: cannot open shared object file: No such file or directory
˵ȱÉÙÕâ¸ö¿âÎļþ ·Ç³£ÄÉÃÆ µ±Ê±±àÒëͨ¹ý»¹ÄÜÕÒ²»µ½Õâ¸ö¿âÎļþÂð£¿
8Â¥2014-09-25 18:49:19
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

ifgovh

½ð³æ (СÓÐÃûÆø)

×Ô¼º¶¥Ò»ÏÂ
9Â¥2014-09-26 11:32:32
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

souledge

ר¼Ò¹ËÎÊ (ÖøÃûдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï
liliangfang: ½ð±Ò+1, лл½»Á÷ 2014-09-29 07:45:53
1. Â¥Ö÷ÐèÒª°ÑMPIµÄbinĿ¼¼ÓÈë»·¾³£¬Èç¹ûÊÇOpenMPI£¬»¹Òª°ÑlibĿ¼¼ÓÈë»·¾³
2. ¶ÔÓÚ¸´ÖÆVASPÓëPOSCAR£¬POTCAR£¬INCAR¼°KPOINTSÒ»¸öĿ¼ÏÂÔËÐУ¬ÐèÒªµÄÃüÁîÓ¦¸ÃÊÇ£º
CODE:
mpirun -n 16 ./vasp

˼ÏëÖØÓÚ¼¼ÇÉ£¬ÄÚº­ÖØÓÚ±íÏó
10Â¥2014-09-28 22:31:25
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû
Ïà¹Ø°æ¿éÌø×ª ÎÒÒª¶©ÔÄÂ¥Ö÷ ifgovh µÄÖ÷Ìâ¸üÐÂ
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