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LAMMPS (1 Feb 2014)
### REAX potential for GO
### This script is prepared on Feb. 9, 2011
### QPHLL

## Initialization
units           real
dimension   3
boundary    p  p  p
atom_style      charge

## Atom definition
read_data       data.CHO
  orthogonal box = (2.1226 -0.257523 -0.855987) to (77.1226 74.7425 24.704)
  4 by 4 by 1 MPI processor grid
  reading atoms ...
  3078 atoms

#Force Field, in ReaxFF, 1-C, 2-H, 3-O, 4-N, 5-S
pair_style      reax
pair_coeff      * * ffield.reax  1 2  3

# Settings
# mass 1 12.0107
# mass 2 1.00794
# mass 3 15.9994

neighbor        2.5 bin
neigh_modify    delay 0 every 2 check yes

# TimeUnit=fs
timestep        0.25

compute reax  all pair reax

variable eb     equal c_reax[1]
variable ea     equal c_reax[2]
variable elp    equal c_reax[3]
variable emol   equal c_reax[4]
variable ev     equal c_reax[5]
variable epen     equal c_reax[6]
variable ecoa    equal c_reax[7]
variable ehb   equal c_reax[8]
variable et    equal c_reax[9]
variable eco     equal c_reax[10]
variable ew    equal c_reax[11]
variable ep   equal c_reax[12]
variable efi     equal c_reax[13]
variable eqeq     equal c_reax[14]


## Output frequency
thermo          10

thermo_style custom step cpu press vol temp etotal pe ke v_eb v_ea v_elp v_emol v_ev v_epen v_ecoa v_ehb v_et v_eco v_ew v_ep v_efi v_eqeq
thermo_modify line one

restart        10000 restart.*


# AtomEye, scaled to box size, xs, ys, zs will be [0,1]
dump    1 all cfg 1000 dump.*.cfg mass type xs ys zs vx vy vz fx fy fz
#dump_modify 1 element C H O
dump_modify 1 sort id


# VMD
dump    2       all dcd 100     movie.dcd
dump_modify 2 sort id


# XYZ
dump    3   all xyz 10000 structure.*.xyz
dump_modify 3 sort id


# Similar to ReaxFF_xmolout, further modification needed!
dump    4   all custom 10 xmolout type x y z
dump_modify 4 sort id

# Charge information
dump    5  all custom 10 charge.q id type q
dump_modify 5 sort id


# Charge informaiton with coordinates
dump    6 all custom 10 coordinate.q id type x y z q
dump_modify 6 sort id



minimize 1.0e-6 1.0e-6 100000 100000
WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173)
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