²é¿´: 1992  |  »Ø¸´: 5
µ±Ç°Ö»ÏÔʾÂú×ãÖ¸¶¨Ìõ¼þµÄ»ØÌû£¬µã»÷ÕâÀï²é¿´±¾»°ÌâµÄËùÓлØÌû

wangcui2011

½ð³æ (СÓÐÃûÆø)

[ÇóÖú] ¹ØÓÚcpmd2cubeµÄÎÊÌâ

ÈõÈõµØÎÊһϣ¬ÎÒʹÓÃÃüÁî
cpmd2cube.x -dens -center --DENSITY
¶ÔÎļþDENSITY½øÐиñʽת»»Ê±£¬³öÏÖ´íÎóÌáʾ£º
could not find file --DENSITY

ͬÑù£¬ÓÃcpmd2cube.x -wave -center --WAVEFUNCTION.4¶ÔWAVEFUNCTION.4½øÐÐת»»Ê±£¬Ò²³öÏÖ´íÎó£º could not find file --WAVEFUNCTION.4
¶øÒÔÉÏÎļþȷʵ´æÔÚ¡£²»ÖªµÀ¾¿¾¹ÄĶù³ö´íÁË¡£¡£¡£
    ÊÇÎÒµÄcpmd2cube³ÌÐòδÕýÈ·±àÒëÂ𣿠  
       Ï£Íû¸ßÊÖ¸øÓèÖ¸µã£¬ÏÈллÀ²£¡
»Ø¸´´ËÂ¥

» ²ÂÄãϲ»¶

» ±¾Ö÷ÌâÏà¹Ø¼ÛÖµÌùÍÆ¼ö£¬¶ÔÄúͬÑùÓаïÖú:

Ïëһǧ´Î£¬²»ÈçÈ¥×öÒ»´Î¡£»ªÀöµÄµøµ¹£¬Ê¤¹ýÎÞνµÄÅÇ»²¡£Ç§ÀïÖ®ÐУ¬Ê¼ÓÚ×ãÏ£¬¼´Ê¹ÎÞ¹¦¶ø·µ£¬Ò²²»ÀË·Ñ´óºÃÇà´º¡£
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

º£ÔÏ315

Òø³æ (СÓÐÃûÆø)

ÒýÓûØÌû:
2Â¥: Originally posted by ChemiAndy at 2011-09-16 07:08:21
Ðֵܣ¬È¥µô --

cpmd2cubeÊÇÕâÑùÓõģº

$cpmd2cube.x -dens -center DENSITY

.read input file ... done
I think you stored a density (sum^2 =  0.73398078E-03)
.building g vectors ... done
creat ...

ÄãºÃ£¡³õѧCPMD£¬ÏëÎÊÒ»ÏÂÄǸöcpmd2cube.xµÄÎļþÊÇÔõôÉú³ÉµÄ°¡ £¿ÎÒÓÐÕâ¸öѹËõÎļþ£¬µ«Ôõô²úÉú.xÎļþÄØ£¿
еÄÈËÉú´Ó´Ë¿ªÊ¼
4Â¥2014-10-19 16:08:22
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû
²é¿´È«²¿ 6 ¸ö»Ø´ð

ChemiAndy

ľ³æ (ÕýʽдÊÖ)


¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï ¡ï ¡ï ¡ï ¡ï ¡ï ¡ï ¡ï
wangcui2011(½ð±Ò+2): µÈÁ˺þã¬ÖÕÓÚÓÐÁËÒ»¸öÃ÷È·µÄ½â´ð~Ì«¸ÐлÁË£¡ÔÙ´Îллָµã 2011-09-16 10:15:54
ghcacj(½ð±Ò+8): лл 2011-09-16 13:09:48
Ðֵܣ¬È¥µô --

cpmd2cubeÊÇÕâÑùÓõģº

$cpmd2cube.x -dens -center DENSITY

.read input file ... done
I think you stored a density (sum^2 =  0.73398078E-03)
.building g vectors ... done
create pdb file DENSITY.pdb... done
.handling file DENSITY
real-space grid was:  70       70       70;   using:       70       70       70
.calculate density ... done   
Integral|| =    1219.8565648868585        6748.3344962837027           343000
Integral() =    1219.8565648868585        6748.3344962837027           343000
creating cube file DENSITY.cube... done

È»ºó£¬
$ vmd DENSITY.cube
È»ºó ²Ëµ¥ - Graphics - representation - create rep - Drawing methodÑ¡isosurface - siovalueÑ¡Ôñ0.01ʲôµÄ£¬¾Í¿ÉÒÔ¿´µ½»ªÀöµÄºÐ×Ӻ͵ç×ÓÔÆ¡£
2Â¥2011-09-16 07:08:21
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

wangcui2011

½ð³æ (СÓÐÃûÆø)

ÒýÓûØÌû:
2Â¥: Originally posted by ChemiAndy at 2011-09-16 07:08:21:
Ðֵܣ¬È¥µô --

cpmd2cubeÊÇÕâÑùÓõģº

$cpmd2cube.x -dens -center DENSITY

.read input file ... done
I think you stored a density (sum^2 =  0.73398078E-03)
.building g vectors ... done
cre ...

Õâ´ÎÕÒµ½ÎļþÁË£¬µ«Êǽá¹ûÈ´ÊÇÕâÑùµÄ£º
.read input file ... read_density_file, c0 incorrectly sized
Ïëһǧ´Î£¬²»ÈçÈ¥×öÒ»´Î¡£»ªÀöµÄµøµ¹£¬Ê¤¹ýÎÞνµÄÅÇ»²¡£Ç§ÀïÖ®ÐУ¬Ê¼ÓÚ×ãÏ£¬¼´Ê¹ÎÞ¹¦¶ø·µ£¬Ò²²»ÀË·Ñ´óºÃÇà´º¡£
3Â¥2011-09-16 10:53:05
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

ChemiAndy

ľ³æ (ÕýʽдÊÖ)


LinuxϽâѹÃüÁ tar zxfv cpmd2cube.tar.gz
×¢Òâcpmd2cube.tar.gzÊÇÄãµÄѹËõ°üµÄÃû×Ö¡£Èç¹û²»Ò»Ñù£¬ÇëÌæ»»³ÉÄãµÄÎļþÃû×Ö¡£
5Â¥2014-10-20 10:11:37
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû
×î¾ßÈËÆøÈÈÌûÍÆ¼ö [²é¿´È«²¿] ×÷Õß »Ø/¿´ ×îºó·¢±í
[˶²©¼ÒÔ°] ÊÛSCIÒ»ÇøÎÄÕ£¬ÎÒ:8.O.55.1.O.54,¿ÆÄ¿ÆëÈ«,¿ÉÙ¤¼± +5 ASdOkHsho7FD 2026-08-28 9/450 2026-08-29 14:03 by jCd0dEvKHShX
[ÕÒ¹¤×÷] ÊÛSCIÎÄÕ£¬ÎÒ:8O5.5.1.O.54,¿ÆÄ¿ÆëÈ«,¿É+¼± +4 ASdOkHsho7FD 2026-08-28 6/300 2026-08-29 11:29 by jCd0dEvKHShX
[¿¼ÑÐ] ÊÛSCIÒ»ÇøÎÄÕ£¬ÎÒ:8.O.55.1.O.54,¿ÆÄ¿ÆëÈ«,¿ÉÙ¤¼± +6 ASdOkHsho7FD 2026-08-28 9/450 2026-08-29 11:18 by jCd0dEvKHShX
[»ù½ðÉêÇë] ÖÐÇà»ùÁËÒª·¢ÅóÓÑȦÂ𣿠+3 349506619 2026-08-28 3/150 2026-08-29 10:49 by ľ·ç9012
[»ù½ðÉêÇë] ͶƱ:  ÓжàÉÙÈËÊǽñÌì²éϵͳ֪µÀ½á¹ûµÄ£¿ +16 °®¿´ÊéµÄ¿ÉÀÖ 2026-08-26 18/900 2026-08-29 10:18 by winsaint
[½Ìʦ֮¼Ò] ÊÛSCI-T0PÎÄÕ£¬ÎÒ:8O.5.5.1.O.54,¿ÆÄ¿ÆëÈ«,¿É+¼± +4 ASdOkHsho7FD 2026-08-28 7/350 2026-08-29 09:26 by G6APbkg8SA6w
[»ù½ðÉêÇë] Ϊʲô×ÊÖúÊý¸÷´ó¸ßУ¶¼´´Ð¸ߣ¬×Ô¼ºÉêÇëÔõô¾ÍÕâôÄÑ +12 Kittylucky 2026-08-27 13/650 2026-08-29 00:04 by superceng
[»ù½ðÉêÇë] ÉêÇëɾ³ý±¾Ìû +6 lyz123lyz 2026-08-27 7/350 2026-08-27 17:31 by Äþ¾²ÖÂÔ¶sy
[»ù½ðÉêÇë] Ôõô¿´Çà»ùÖÐÁËûÓа¡ +5 Ò¶¾Å΢ 2026-08-26 5/250 2026-08-27 10:35 by l_zh2008
[»ù½ðÉêÇë] Ϊʲô ¹ú¼Ê(µØÇø)ºÏ×÷Óë½»Á÷ÏîÄ¿ ûÓзŰñ£¿ 10+3 majunge000 2026-08-26 11/550 2026-08-27 08:42 by ±±¾©À³Òð±à¼­
[»ù½ðÉêÇë] 2026Äê8ÔÂ25ÈÕ¹ú×ÔÈ»·Å°ñǰͻȻÊÕµ½ÁÐÈëÆÀÉóר¼ÒÓʼþ£¬ÓйØÏµÂ𣿠+25 ľˮ˼¶¹ 2026-08-25 28/1400 2026-08-26 14:53 by draco1987
[»ù½ðÉêÇë] ³öÀ´ÁË +9 trojank 2026-08-26 9/450 2026-08-26 14:25 by ±¦±´³æ×Ó
[»ù½ðÉêÇë] Ϊʲô¹ú×ÔÈ»²»ÄÜÖ±½Ó¹«²¼ +4 bjdxyxy 2026-08-26 4/200 2026-08-26 13:12 by qingmu1201
[»ù½ðÉêÇë] ϵͳ½ø²»È¥ +4 yanglien 2026-08-26 5/250 2026-08-26 11:10 by wenfengw83
[Ö°³¡ÈËÉú] ѧÉúײ¼û¸¨µ¼Ô±ËÍÍâÂô£¬µÚ¶þÌìÈ«°à¶¼³ÁĬÁË +3 ¾¨ÓãÈÚ½ð_Õã½­_É 2026-08-22 3/150 2026-08-26 09:01 by zzuzxg
[»ù½ðÉêÇë] Å£À´£¡Ã×À´£¡ÃæÀ´£¡ +8 beefly 2026-08-26 8/400 2026-08-26 08:37 by xuzhipiao
[»ù½ðÉêÇë] Ã÷ÌìÓ¦¸Ã¿É²éÁË£¡£¿ +6 chengyan1220 2026-08-23 6/300 2026-08-25 19:45 by zfd97
[»ù½ðÉêÇë] ijЩ»ú¹¹£¬ÒÔЧÂʵÍΪÈÙ£¬ÒÔЧÂʵÍ×÷Ϊ´æÔڸР+9 yuleib84 2026-08-25 10/500 2026-08-25 17:14 by alexon
[»ù½ðÉêÇë] Èç¹û´Ë¿ÌÄãÕýÔÚΪ¹ú»ù¸Ðµ½½¹ÂÇ£¬²»·ÁÀ´ÌýÌýÕâÊס¶»ù½ðÖ®Íâ¡· +8 scalable 2026-08-24 8/400 2026-08-25 12:52 by jnhyjjm
[»ù½ðÉêÇë] ûÓÐÈκÎÏûÏ¢-ÊDz»ÊǾÍÁ¹ÁË +9 ͼÀ²Í¼À² 2026-08-24 10/500 2026-08-25 11:59 by ÄϺ£Ð¡¸ç
ÐÅÏ¢Ìáʾ
ÇëÌî´¦ÀíÒâ¼û