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dandan_hui

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[交流] 【求助/交流】重金求关于PULL-DOWN 的protocol一篇

求各位同仁给一篇pull-down 的protocol,在网上找了好久也没找到,谢谢大家啦
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snowice

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★ ★ ★
scelab(金币+3):谢谢交流!:tiger06: 2010-09-02 23:00:29
dandan_hui(金币+1): 2010-09-03 08:14:24
GST-Fusion Protein Purification and Pull Down Assay


1.  Grow BL21 bacteria containing plasmid(from a single colony or -70°C stock,) in 5ml LB plus 50ug/ml ampicillin at 37°C shaker for overnight;   
2.  Inoculate 400ml of LB plus 50ug/ml ampicillin with 4mlo/n culture;
3.  Grow for 2-3 hrs until OD600 is 0.5;
4.  Add IPTG to a final concentration of 0.1 and grow at 37°C for 2-3hrs(update, except inducing GST-Rhoteckin at 30°C for 3hrs because of its unstability);
5.  Spin 6k rpm for 15 min 4°C and resuspend the pellet in 10ml of PBS plus 1mM PMSF and 10mM benzamidine;
6.  Sonicate 5x30sec, at maximum power; Incubate the sonicates in ice between sonications for 30sec;
7.  Add Triton X-100 to 1% and DTT to 1mM (both final concentration) and incubate for 30min in ice;
8.  Spin 7k rpm for 10min at 4°C. Take the supernatant for the next step and save the pellet for inclusion body purification.
9.  Transfer the supernatant into a 50 ml conical tube, add 25ml in PBS plus 1mM PMSF and 10mM Benzamidine and 2ml 1:1 slurry of glutathione-agarose beads. (If make GST fusion protein from 5ml culture, reduce the PBS volume to 1ml and add 50ul glutathione-agarose beads) The beads need to be preswollen overnight in PBS and washed 4 times with PBS before use.
10. Incubate at 4°C on a rotator for overnight;
11. Wash the beads with PBS at 4°C for 5 times.
12. Batch elute with 1 column volume of 20mM glutathione in 20mM Tris, pH8.0 for 6 times.
13. Pool and dialyze against 4 liters of PBS o/n at 4°C.
14. The GST fusion protein can be estimated by measuring the absorbance at 280nm. For the GST
affinity tag, 1A280=0.5mg/ml. Also, it can be determined by SDS-PAGE with standard BSA protein.
15.  Incubate about 500mg cell lysate with 2-5ug GST fusion protein and 40ul Gluthatione-agarose beads(if the GST fusion protein-binding beads are less than 40ul, use empty beads to 40ul) in a total 1ml volume(adjust to 1ml volume with RIPA buffer ) at 4°C on a rotator for at least 1hr.  Briefly wash the beads with Modified RIPA buffer for 3 times.
16. Elute the protein into the SDS loading buffer, then run SDS-PAGE gel.

Reagent:

1.  Glutathione-Agrose beads: G-4510 from Sigma.
2.  Glutathione, reduced form: G-6529 from Sigma.
3.  Benzamidine: B-6506 from Sigma, 1M stock solution.
4.  PMSF(phenylmethyl-sulfonyl fluoride): P7626 from Sigma, 0.1M stock solution in isopropanol.
5.  RIPA buffer:150mM NaCl, 50mM Tris.HCl(PH7.5), 1%NP-40, 0.25% Sodium Deoxyclolate, 2mM EGTA(stock solution 0.4M add before use), 1mM NaVO4(200mM stock solution, add before use)
6.  6XSDS loading buffer: 0.35M Tris-HCl(pH6.8), 10.28(w/v)%SDS, 36%(v/v) glycerol, 0.6M dithiothreitol(or 5%β-mercaptoethanol), 0.012%(w/v)bromophenol blue. Store in 0.5ml aliquots at -80°C.
爱吃爱睡懒得要死的猪头
2楼2010-09-02 22:46:17
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biotech113

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dandan_hui(金币+9): 2010-09-03 08:14:20
lstt09nk(金币+1):很热心~~ 2010-09-03 09:52:22
我这儿有个GST-Pull-Down 的Protocol, 你可以参看下
http://d.namipan.com/d/b8f32bd3e ... bcaa9b580d1b6780400
不抛弃,不放弃!
3楼2010-09-02 23:03:53
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