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Ó°ÔÂbeatrice

Ìú³æ (³õÈëÎÄ̳)

[ÇóÖú] ¹ØÓÚfix shakeÒÔ¼°computeÃüÁîµÄÓ¦ÓÃÎÊÌâ ÒÑÓÐ1È˲ÎÓë

ÎÒ×î½üдÁËÒ»¸ö¹ØÓÚ³¬ÁÙ½çË®µÄinÎļþ£¬ÀïÃæÓõ½ÁËfix shakeÃüÁµ«ÔËÐеÄʱºòÒ»Ö±±¨´íERROR: Invalid fix style£¬ÎÒ¶ÔÕÕmanuel¼ì²éÁËÃüÁî¸ñʽ£¬Ã»Óз¢ÏÖÎÊÌ⣬½ûÁËfix shakeºóÔËÐÐÓÖ³öÏÖERROR: Invalid compute style£¬¶¼Ã»²é³öÎÊÌâÔÚÄÄÀÇë¸÷λ´óÏÀ²»Áߴͽ̣¬Ð¡Å®×ÓÏÈл¹ýÁË
ÒÔÏÂÊÇÎÒµÄinÎļþ
units real
dimension 3
boundary p p p
atom_style full
pair_style lj/charmm/coul/charmm 7.5 8.0 8.0 10.0
bond_style harmonic
angle_style harmonic
read_data data.Mol
angle_coeff 1  55.0000   104.5200
bond_coeff  1  450.0000   0.9572
pair_coeff 1 1 0.1521 3.1507
pair_coeff 1 2 0.0836 1.7753
pair_coeff 2 2 0.0460 0.4000
region 1 block INF INF INF INF INF INF
velocity all create 640 100
velocity all scale 640
#group water type 1 2
fix 1 all shake 0.0001 20 0 b 1 a 1
fix 2 all npt temp 640 760 1000 iso 236.92 236.92 1000 drag 1
timestep 0.01
compute 1 all ke
compute 2 all pe
compute 3 all temp
compute 4 all dilatation/atom
compute 5 all displace/atom
thermo 500
thermo_style custom temp press density vol pe ke etotal enthalpy
run 1000

dataÎļþÈçÏÂ
LAMMPS data file from msi2lmp v3.8 for Mol

      6 atoms
      4 bonds
      2 angles
      0 dihedrals
      0 impropers

   2 atom types
   1 bond types
   1 angle types

    -0.854007846     3.056692154 xlo xhi
    -0.764937233     3.145762767 ylo yhi
    -1.347689527     2.563010473 zlo zhi

Masses

   1  15.999400
   2   1.007970

Atoms

      1      1   1 -0.798200     0.121798883     0.387575451     0.043193656   0   1   0
      2      1   2  0.399100     0.308427222     1.054689176    -0.656528781   0   1   0
      3      1   2  0.399100     0.163119246    -0.433256524    -0.481969457   0   1   0
      4      2   1 -0.798200     1.973583684     2.001768480     1.988670964   0  -1   0
      5      2   2  0.399100     2.453643042     1.441265665     1.343893247   0  -1   0
      6      2   2  0.399100     1.587480847     2.690434354     1.408703210   0  -1   0

Bonds

     1   1      1      2
     2   1      1      3
     3   1      4      5
     4   1      4      6

Angles

     1   1      2      1      3
     2   1      5      4      6
»Ø¸´´ËÂ¥
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yuexiaoming

гæ (СÓÐÃûÆø)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

fix shake ËùÐèÒªµÄrigid panckage ³öÎÊÌâÁË
2Â¥2014-08-28 17:10:53
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

dgwfly

гæ (ÕýʽдÊÖ)

ÒýÓûØÌû:
2Â¥: Originally posted by yuexiaoming at 2014-08-28 17:10:53
fix shake ËùÐèÒªµÄrigid panckage ³öÎÊÌâÁË

ÎÒÒ²Óöµ½ÀàËÆµÄÎÊÌâÁË£¬µ«ÒѰ²×°rigid package£¬¿É»¹ÊÇÏÔʾunknown fix shake style

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3Â¥2017-07-12 01:42:23
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

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