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ONLYRACHEL

新虫 (初入文坛)

[求助] 蛋白三级结构预测

我有一个蛋白要进行三级结构预测。
    用SWISS-MODEL,结果是 No suitable templates found!Unfortunately, we could not identify useful template structures
    用CPHmodels-3.2 Server,结果Round   0. Hits better than threshold: 0.000010:
Found 0。和Z-Score: 4.2。  Z-score above 10 indicates a high reliability model。说结果不可靠。
    用PHYRE2 Protein Fold Recognition Server。结果出来了一张三维的图。但是Confidence:        53.9%。这个百分率能用吗?
    我这个蛋白是不是没有同源的已知结构的模板?不大懂啊!
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robustli

银虫 (小有名气)

【答案】应助回帖

search the NCBI database
immunologyparasite
5楼2013-04-12 04:46:17
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robustli

银虫 (小有名气)

【答案】应助回帖

感谢参与,应助指数 +1
So far as I know, PHYRE2 Protein Fold Recognition Server is the best 3d prediction website. Have you ever search the NCBI to see if any protein related to your protein being crystalizde?
immunologyparasite
2楼2013-04-11 02:23:36
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zc10052157

新虫 (正式写手)

【答案】应助回帖

感谢参与,应助指数 +1
没有同源模板怎么做预测呢?
hold住
3楼2013-04-11 09:40:06
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ONLYRACHEL

新虫 (初入文坛)

引用回帖:
2楼: Originally posted by robustli at 2013-04-11 02:23:36
So far as I know, PHYRE2 Protein Fold Recognition Server is the best 3d prediction website. Have you ever search the NCBI to see if any protein related to your protein being crystalizde?

怎么看与我蛋白有关的蛋白有没有crystalizde?
多谢啊!
4楼2013-04-11 12:40:54
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