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tianyueli

金虫 (小有名气)

[求助] autodock对接结果无法分析

Python 2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)] on win32
Type "copyright", "credits" or "license()" for more information.

    ****************************************************************
    Personal firewall software may warn about the connection IDLE
    makes to its subprocess using this computer's internal loopback
    interface.  This connection is not visible on any external
    interface and no data is sent to or received from the Internet.
    ****************************************************************
   
IDLE 1.2.2      ==== No Subprocess ====
>>> ERROR *********************************************
Traceback (most recent call last):
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\ViewerFramework\VF.py", line 898, in tryto
    result = command( *args, **kw )
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\AutoDockTools\autoanalyzeCommands.py", line 3087, in doit
    self.build()
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\AutoDockTools\autoanalyzeCommands.py", line 2912, in build
    self.intDescr = InteractionDescriptor(lig, macro, percentCutoff)
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\MolKit\interactionDescriptor.py", line 49, in __init__
    self.build(detect_pi=detect_pi)
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\MolKit\interactionDescriptor.py", line 60, in build
    self.buildCloseContactAtoms(percentCutoff)              #
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\MolKit\interactionDescriptor.py", line 69, in buildCloseContactAtoms
    self.macro_atoms, percentCutoff=percentCutoff)
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\MolKit\distanceSelector.py", line 106, in select
    bigC = Numeric.resize(c, (lenC, lenC, 3))
  File "E:\tianyueli\ruanjian\autodock\mgl\lib\site-packages\numpy\core\fromnumeric.py", line 615, in resize
    a = concatenate( (a,)*n_copies)
MemoryError
无法显示蛋白质和药物分子相互作用,请教各位虫友出现错误的原因。
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yuxiaojuan

银虫 (初入文坛)

这个问题是怎么解决的呀?我也遇到了同样的问题!
2楼2013-01-05 14:17:19
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tianyueli

金虫 (小有名气)

蛋白质预处理时,需要加极性氢
3楼2013-01-07 09:29:47
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