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wizardfan
ÖÁ×ðľ³æ (ÖøÃûдÊÖ)
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xiezhancnu: ½ð±Ò+30 2012-08-14 13:11:13
¸Ðл²ÎÓ룬ӦÖúÖ¸Êý +1
xiezhancnu: ½ð±Ò+30 2012-08-14 13:11:13
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use strict; use Data: umper;#create index for names to avoid the situation that two files have different order of gene names my %idx; my %idxReverse; open IN,"pvalue.csv"; my $line = chomp($line); my @arr = split(",",$line); my $len = scalar @arr; for(my $i=1;$i<$len;$i++){ $idx{$arr[$i]}=$i; $idxReverse{$i}=$arr[$i]; } close IN; #populate the data structure my %hash;#values my @tags;#the elements to be displayed in the header line after gene1 and gene2 &dealOneFile("cor.csv","correlation" ;&dealOneFile("pvalue.csv","pvalue" ;#print the result #header print "gene1,gene2"; foreach my $tag(@tags){ print ",$tag"; } print "\n"; #values foreach my $aa(sort {$a<=>$b} keys %hash){ my %tmp = %{$hash{$aa}}; foreach my $bb(sort {$a<=>$b} keys %tmp){ print "$idxReverse{$aa},$idxReverse{$bb}"; foreach my $tag(@tags){ print ",$hash{$aa}{$bb}{$tag}"; } print "\n"; } } sub dealOneFile{ my $filename = $_[0]; my $tag = $_[1]; push(@tags,$tag); open IN,"$filename"; my $line = chomp($line); my @header = split(",",$line); shift @header; my $count = 0; while($line= chomp($line); $count++; my @arr = split(",",$line); my $current = shift(@arr); my $currentIdx = $idx{$current}; for(my $i=$count;$i<$len;$i++){ my $second = $header[$i]; my $secondIdx = $idx{$second}; if ($currentIdx<$secondIdx){ $hash{$currentIdx}{$secondIdx}{$tag}=$arr[$i]; }else{ $hash{$secondIdx}{$currentIdx}{$tag}=$arr[$i]; } } } } ²»ÖªµÀʲôÔÒò£¬ÄãÀÏÊǰÑÎļþÃû¸ã´í£¬×Ô¼ºÈÏÕæµã°É¡£PerlÊǺܻù´¡µÄÉúÎïÐÅϢѧ¹¤¾ß£¬ºÃºÃŪ¶®£¬±ðÀÏÊÇÒ»²»»á¾ÍÀ´ÌáÎÊÁË¡£×Ô¼ºµÄ±¾Áì²ÅÊÇ×î¹Ø¼üµÄ¡£ |
2Â¥2012-08-13 06:02:26
wizardfan
ÖÁ×ðľ³æ (ÖøÃûдÊÖ)
- Ó¦Öú: 599 (²©Ê¿)
- ¹ó±ö: 1.818
- ½ð±Ò: 24632.2
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- ×¢²á: 2012-07-05
- ÐÔ±ð: GG
- רҵ: ÉúÎïÐÅϢѧ
¡ï
xzhdty: ½ð±Ò+1, лл 2012-08-13 22:23:33
xzhdty: ½ð±Ò+1, лл 2012-08-13 22:23:33
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Õâ¸ö³ÌÐò¿ÉÒÔ´¦ÀíÈÎÒâ¶à¸ö»ùÒò£¬ÈÎÒâ¶à¸öÊý¾ÝÎļþ£¨±ÈÈ绹ÓиöÎļþ½Ðsimilarity),Ö»ÒªÄÚ´æ¹»¡£µ«ÊÇÓÐÒ»¸öÒªÇó£¬ÊäÈë¸ñʽ±ØÐëÊÇCSV£¬comma separated values¡£ ÀýÈç ,DR_2577,DR_A0328,DR_2258,DR_0109,DR_0465,DR_0539,DR_1356,DR_2207,DR_2121,DR_1962 DR_2577,NA,1.71E-08,0.000439,0.026534,1.15E-06,0.712607,0.052184,7.77E-17,2.91E-10,4.74E-17 DR_A0328,NA,NA,0.011085,0.067408,4.92E-07,0.535037,0.019445,4.43E-09,1.27E-07,1.07E-07 DR_2258,NA,NA,NA,0.824648,0.00147,0.054368,0.016167,0.003185,0.000694,0.00236 DR_0109,NA,NA,NA,NA,0.09646,0.161788,0.696339,0.004726,0.007971,0.040283 DR_0465,NA,NA,NA,NA,NA,0.189011,0.012672,1.10E-06,4.67E-06,0.000102 DR_0539,NA,NA,NA,NA,NA,NA,0.034369,0.57409,0.306483,0.573561 DR_1356,NA,NA,NA,NA,NA,NA,NA,0.217671,0.024297,0.381359 DR_2207,NA,NA,NA,NA,NA,NA,NA,NA,6.84E-10,5.93E-13 DR_2121,NA,NA,NA,NA,NA,NA,NA,NA,NA,1.38E-09 DR_1962,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA |
3Â¥2012-08-13 06:05:12













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