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nufang19a

金虫 (正式写手)


[交流] 【求助】在使用sybylx1.1 的ORCHESTRAR出现新问题 已有2人参与

我按照教程上的:
At the SYBYL prompt in the command console type spawn
In the external command shell type on a single line:
gzip -cd $TA_DEMO/orchestrar/fugue_run_query.tar.gz | tar xvf -
一个目录 fugue_run_query 产生了
可是:
Biopolymer > Model Proteins > ORCHESTRAR
In the ORCHESTRAR - Project Manager, click New Project.
In the Select New Project Type dialog, make sure that FUGUE Run
Results is on and click Import.
select the largest family in the list, sermam, from
which the comparative model will be constructed.
In the Alignment File pull-down, select model_sequence_sermam_ma.ali as the file that will provide sequence alignment information between the query sequence and
the homologs.
Click Import.
然后就出现了如下问题:
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nufang19a

金虫 (正式写手)


SYBYL> Trying to import model_sequence_sermam_ma.ali...
getfuguefam.sh - ERROR: Alignment file /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_hsd1hava_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_aa.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_hh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_ma.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_aa.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_hh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_ma.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/sermam.ali not found
Assigned query as query/target sequence

Summary for model_sequence_sermam_ma.ali
Query:   query
Homolog: 1bbr - READ ERROR (not found)
Homolog: 1ppb - READ ERROR (not found)
Homolog: 1kigh - READ ERROR (not found)
Homolog: 1fxya - READ ERROR (not found)
Homolog: 2ptn - READ ERROR (not found)
Homolog: 1mcta - READ ERROR (not found)
Homolog: 1trma - READ ERROR (not found)
Homolog: 1a0ja - READ ERROR (not found)
Homolog: 2tbs - READ ERROR (not found)
Homolog: 1ab9 - READ ERROR (not found)
Homolog: 1ton - READ ERROR (not found)
Homolog: 2pka - READ ERROR (not found)
Homolog: 1npma - READ ERROR (not found)
Homolog: 1azza - READ ERROR (not found)
Homolog: 3est - READ ERROR (not found)
Homolog: 1a0la - READ ERROR (not found)
Homolog: 1lmwb - READ ERROR (not found)
Homolog: 1a5ia - READ ERROR (not found)
Homolog: 1a5ha - READ ERROR (not found)
Homolog: 1fuja - READ ERROR (not found)
Homolog: 1hnee - READ ERROR (not found)
Homolog: 1a7s - READ ERROR (not found)
Homolog: 3rp2a - READ ERROR (not found)
Homolog: 1klt - READ ERROR (not found)
Homolog: 1dfpa - READ ERROR (not found)
Homolog: 1sgt - READ ERROR (not found)
ERROR: No homologs imported!
PROGRAM_ERROR -
4楼2011-01-24 16:59:59
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nufang19a

金虫 (正式写手)


是不是我的目录不对啊??
2楼2011-01-24 15:24:28
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nufang19a

金虫 (正式写手)


HI0029与fugue_run_query都在主目录root下
3楼2011-01-24 15:36:31
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nufang19a

金虫 (正式写手)


根据错误提示,我发现,在/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/
目录下,也存在这些文件啊,这是怎么回事呢??
5楼2011-01-24 17:01:53
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