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nufang19a

金虫 (正式写手)


[交流] 【求助】在使用sybylx1.1 的ORCHESTRAR出现新问题 已有2人参与

我按照教程上的:
At the SYBYL prompt in the command console type spawn
In the external command shell type on a single line:
gzip -cd $TA_DEMO/orchestrar/fugue_run_query.tar.gz | tar xvf -
一个目录 fugue_run_query 产生了
可是:
Biopolymer > Model Proteins > ORCHESTRAR
In the ORCHESTRAR - Project Manager, click New Project.
In the Select New Project Type dialog, make sure that FUGUE Run
Results is on and click Import.
select the largest family in the list, sermam, from
which the comparative model will be constructed.
In the Alignment File pull-down, select model_sequence_sermam_ma.ali as the file that will provide sequence alignment information between the query sequence and
the homologs.
Click Import.
然后就出现了如下问题:
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nufang19a

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是不是我的目录不对啊??
2楼2011-01-24 15:24:28
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nufang19a

金虫 (正式写手)


HI0029与fugue_run_query都在主目录root下
3楼2011-01-24 15:36:31
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nufang19a

金虫 (正式写手)


SYBYL> Trying to import model_sequence_sermam_ma.ali...
getfuguefam.sh - ERROR: Alignment file /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_hsd1hava_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_aa.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_hh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_ma.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_aa.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_hh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_ma.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/sermam.ali not found
Assigned query as query/target sequence

Summary for model_sequence_sermam_ma.ali
Query:   query
Homolog: 1bbr - READ ERROR (not found)
Homolog: 1ppb - READ ERROR (not found)
Homolog: 1kigh - READ ERROR (not found)
Homolog: 1fxya - READ ERROR (not found)
Homolog: 2ptn - READ ERROR (not found)
Homolog: 1mcta - READ ERROR (not found)
Homolog: 1trma - READ ERROR (not found)
Homolog: 1a0ja - READ ERROR (not found)
Homolog: 2tbs - READ ERROR (not found)
Homolog: 1ab9 - READ ERROR (not found)
Homolog: 1ton - READ ERROR (not found)
Homolog: 2pka - READ ERROR (not found)
Homolog: 1npma - READ ERROR (not found)
Homolog: 1azza - READ ERROR (not found)
Homolog: 3est - READ ERROR (not found)
Homolog: 1a0la - READ ERROR (not found)
Homolog: 1lmwb - READ ERROR (not found)
Homolog: 1a5ia - READ ERROR (not found)
Homolog: 1a5ha - READ ERROR (not found)
Homolog: 1fuja - READ ERROR (not found)
Homolog: 1hnee - READ ERROR (not found)
Homolog: 1a7s - READ ERROR (not found)
Homolog: 3rp2a - READ ERROR (not found)
Homolog: 1klt - READ ERROR (not found)
Homolog: 1dfpa - READ ERROR (not found)
Homolog: 1sgt - READ ERROR (not found)
ERROR: No homologs imported!
PROGRAM_ERROR -
4楼2011-01-24 16:59:59
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nufang19a

金虫 (正式写手)


根据错误提示,我发现,在/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/
目录下,也存在这些文件啊,这是怎么回事呢??
5楼2011-01-24 17:01:53
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nufang19a

金虫 (正式写手)


最新发现,如果不选择sermam,而选择其他的,则不会出现这种情况,不知道这是为什么??
6楼2011-01-24 21:46:47
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nufang19a

金虫 (正式写手)


已解决,是软件自带文件本身的问题。因为我自己放了模板去做的时候,都没有出现这方面的问题。谢谢大家的关注。
7楼2011-01-25 16:23:35
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fy_14720982

新虫 (初入文坛)


小木虫: 金币+0.5, 给个红包,谢谢回帖
偶也遇到同样 的问题,但没有解决,前辈能否指点一二
8楼2015-03-17 15:12:31
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