查看: 1063  |  回复: 7

nufang19a

金虫 (正式写手)


[交流] 【求助】在使用sybylx1.1 的ORCHESTRAR出现新问题 已有2人参与

我按照教程上的:
At the SYBYL prompt in the command console type spawn
In the external command shell type on a single line:
gzip -cd $TA_DEMO/orchestrar/fugue_run_query.tar.gz | tar xvf -
一个目录 fugue_run_query 产生了
可是:
Biopolymer > Model Proteins > ORCHESTRAR
In the ORCHESTRAR - Project Manager, click New Project.
In the Select New Project Type dialog, make sure that FUGUE Run
Results is on and click Import.
select the largest family in the list, sermam, from
which the comparative model will be constructed.
In the Alignment File pull-down, select model_sequence_sermam_ma.ali as the file that will provide sequence alignment information between the query sequence and
the homologs.
Click Import.
然后就出现了如下问题:
回复此楼

» 猜你喜欢

» 本主题相关价值贴推荐,对您同样有帮助:

已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)


是不是我的目录不对啊??
2楼2011-01-24 15:24:28
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)


HI0029与fugue_run_query都在主目录root下
3楼2011-01-24 15:36:31
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)


SYBYL> Trying to import model_sequence_sermam_ma.ali...
getfuguefam.sh - ERROR: Alignment file /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_hsd1hava_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_aa.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_hh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_ma.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_aa.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_hh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_ma.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_mh.ali
/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/sermam.ali not found
Assigned query as query/target sequence

Summary for model_sequence_sermam_ma.ali
Query:   query
Homolog: 1bbr - READ ERROR (not found)
Homolog: 1ppb - READ ERROR (not found)
Homolog: 1kigh - READ ERROR (not found)
Homolog: 1fxya - READ ERROR (not found)
Homolog: 2ptn - READ ERROR (not found)
Homolog: 1mcta - READ ERROR (not found)
Homolog: 1trma - READ ERROR (not found)
Homolog: 1a0ja - READ ERROR (not found)
Homolog: 2tbs - READ ERROR (not found)
Homolog: 1ab9 - READ ERROR (not found)
Homolog: 1ton - READ ERROR (not found)
Homolog: 2pka - READ ERROR (not found)
Homolog: 1npma - READ ERROR (not found)
Homolog: 1azza - READ ERROR (not found)
Homolog: 3est - READ ERROR (not found)
Homolog: 1a0la - READ ERROR (not found)
Homolog: 1lmwb - READ ERROR (not found)
Homolog: 1a5ia - READ ERROR (not found)
Homolog: 1a5ha - READ ERROR (not found)
Homolog: 1fuja - READ ERROR (not found)
Homolog: 1hnee - READ ERROR (not found)
Homolog: 1a7s - READ ERROR (not found)
Homolog: 3rp2a - READ ERROR (not found)
Homolog: 1klt - READ ERROR (not found)
Homolog: 1dfpa - READ ERROR (not found)
Homolog: 1sgt - READ ERROR (not found)
ERROR: No homologs imported!
PROGRAM_ERROR -
4楼2011-01-24 16:59:59
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)


根据错误提示,我发现,在/tripos/sybylx1.1/orchestrar_db/homstrad/sermam/
目录下,也存在这些文件啊,这是怎么回事呢??
5楼2011-01-24 17:01:53
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)


最新发现,如果不选择sermam,而选择其他的,则不会出现这种情况,不知道这是为什么??
6楼2011-01-24 21:46:47
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)


已解决,是软件自带文件本身的问题。因为我自己放了模板去做的时候,都没有出现这方面的问题。谢谢大家的关注。
7楼2011-01-25 16:23:35
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

fy_14720982

新虫 (初入文坛)

★
小木虫: 金币+0.5, 给个红包,谢谢回帖
偶也遇到同样 的问题,但没有解决,前辈能否指点一二
8楼2015-03-17 15:12:31
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
相关版块跳转 我要订阅楼主 nufang19a 的主题更新
普通表情 龙 兔 虎 猫 高级回复 (可上传附件)
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[硕博家园] 极限拉扯,如何抉择 +11 Isak0320 2026-10-12 15/750 2026-10-14 21:55 by 猫鱼不是鱼
[硕博家园] 中科院海洋所招收海洋材料相关领域博士研究生及研究助理 +3 sujiner 2026-10-08 4/200 2026-10-14 20:40 by qicaiyun
[职场人生] 40+中年人失业后,还能找到好工作吗? +3 xqy2009 2026-10-13 3/150 2026-10-14 20:17 by 43358052
[论文投稿] 二审4个多月了还是Awaiting Reviewer Scores 10+3 纳斯达克ML 2026-10-11 4/200 2026-10-14 17:30 by babero
[有机交流] OpenAI又攻克数学难题了,离AI做有机合成还有多远? +8 wangyl_123 2026-10-10 13/650 2026-10-14 15:12 by zuesli
[教师之家] 课题组会帮你通过考核么? +4 好运来~9527 2026-10-10 7/350 2026-10-13 08:41 by xli1984
[基金申请] 入职后第一次管课题组的专利缴费,对账才发现官费比别人多掏了一倍 +6 13108017953 2026-10-08 6/300 2026-10-12 20:07 by w3w3y3
[公派出国] 售一区SCI文章T0P,我:8O.551.O54,科目全,可十急 +5 qR2AdCWTVtkw 2026-10-09 9/450 2026-10-11 22:34 by XQNyDCa1Tk5n
[公派出国] 售SCI一区文章,我:8O5.5.1.O5.4,科目全,可伽急 +5 qR2AdCWTVtkw 2026-10-09 10/500 2026-10-11 22:26 by XQNyDCa1Tk5n
[找工作] 售SCI一区T0P文章,我:8.O55.1.O.54,科目全,可十急 +5 qR2AdCWTVtkw 2026-10-09 8/400 2026-10-11 22:26 by XQNyDCa1Tk5n
[考博] 售SCI一区文章,我:8.O.55.1.O.54,科目齐全,可伽急 +3 qR2AdCWTVtkw 2026-10-09 7/350 2026-10-11 22:11 by XQNyDCa1Tk5n
[教师之家] 售SCI文章,我:8O5.5.1.O.54,科目齐全,可+急 (EPI+-1)(金币-50) +5 qR2AdCWTVtkw 2026-10-09 10/500 2026-10-11 22:06 by XQNyDCa1Tk5n
[教师之家] 售SCI文章,我:8O.5.5.1O.54,科目全,可十急 (EPI+-1)(金币-50) +4 qR2AdCWTVtkw 2026-10-09 7/350 2026-10-11 14:05 by VOMexwnDzOFZ
[硕博家园] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +5 qR2AdCWTVtkw 2026-10-09 8/400 2026-10-11 13:45 by VOMexwnDzOFZ
[找工作] 售SCI一区T0P文章,我:8O.55.1.O.5.4,科目齐全,可+急 +3 qR2AdCWTVtkw 2026-10-09 7/350 2026-10-11 10:54 by VOMexwnDzOFZ
[找工作] 售SCI一区T0P文章,我:8O.55.1.O.5.4,科目齐全,可+急 +4 qR2AdCWTVtkw 2026-10-09 7/350 2026-10-11 10:34 by VOMexwnDzOFZ
[考博] 招收博士生一名 +3 mandolin 2026-10-10 3/150 2026-10-11 10:21 by 不是山谷!
[公派出国] 售SCI一区T0P文章,我:8O.55.1.O.54,科目全,可伽急 +4 qR2AdCWTVtkw 2026-10-09 4/200 2026-10-11 03:14 by M0zrYVSAnxpE
[有机交流] 各位大佬,路线设计求助 +6 zapen 2026-10-08 8/400 2026-10-10 15:59 by zapen
[有机交流] 我应该选哪条合成路线让实验成功率高一些? +5 jing816y 2026-10-08 9/450 2026-10-10 09:05 by zapen
信息提示
请填处理意见