| 查看: 1017 | 回复: 7 | |||
[交流]
【求助】在使用sybylx1.1 的ORCHESTRAR出现新问题 已有2人参与
|
|
我按照教程上的： At the SYBYL prompt in the command console type spawn In the external command shell type on a single line: gzip -cd $TA_DEMO/orchestrar/fugue_run_query.tar.gz | tar xvf - 一个目录 fugue_run_query 产生了 可是： Biopolymer > Model Proteins > ORCHESTRAR In the ORCHESTRAR - Project Manager, click New Project. In the Select New Project Type dialog, make sure that FUGUE Run Results is on and click Import. select the largest family in the list, sermam, from which the comparative model will be constructed. In the Alignment File pull-down, select model_sequence_sermam_ma.ali as the file that will provide sequence alignment information between the query sequence and the homologs. Click Import. 然后就出现了如下问题：  |
回复此楼» 猜你喜欢
有多少人是今天查系统知道结果的？
已经有17人回复
-
国自然面上复盘~欢迎讨论
已经有9人回复
-
看板上这么多中的，有点像50人群里49个人都是骗子的那种感觉……
已经有6人回复
-
导师吐槽：我怎么摊上了这么个极品研究生！
已经有6人回复
-
青基如何破局
已经有4人回复
-
基金不中，共勉
已经有8人回复
-
基金未中，这种答复是模板吗？
已经有5人回复
-
为什么资助数各大高校都创新高，自己申请怎么就这么难
已经有5人回复
-
怎么看青基中了没有啊
已经有5人回复
-
梦想
已经有3人回复
» 本主题相关价值贴推荐，对您同样有帮助:
- 关于design expert 的新手问题
已经有5人回复
- 合成柠檬酸根修饰的磁性纳米粒子时遇到的问题
已经有7人回复
- 有关PDB数据库的使用问题
已经有11人回复
- （实验）在石英砂中种植玉米幼苗出现这种问题，什么原因，如何避免？
已经有4人回复
- 氰化亚铜氰基化产物问题
已经有6人回复
- 盐酸莫西沙星注册问题
已经有6人回复
- 关于微CT扫描图像处理过程中物质相的分离方法（即阈值确定问题）
已经有13人回复
- 酶切后未纯化连接出现的问题
已经有18人回复
- 钢瓶使用中出现问题，高压表读数总为0
已经有20人回复
- THF的使用问题
已经有24人回复
- 菌体培养出现问题
已经有9人回复
- 粘结磁体的问题
已经有4人回复
2楼2011-01-24 15:24:28
3楼2011-01-24 15:36:31
|
SYBYL> Trying to import model_sequence_sermam_ma.ali... getfuguefam.sh - ERROR: Alignment file /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_hsd1hava_mh.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_aa.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_hh.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_ma.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_serbact_mh.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_aa.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_hh.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_ma.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/model_sequence_sermam_mh.ali /tripos/sybylx1.1/orchestrar_db/homstrad/sermam/sermam.ali not found Assigned query as query/target sequence Summary for model_sequence_sermam_ma.ali Query: query Homolog: 1bbr - READ ERROR (not found) Homolog: 1ppb - READ ERROR (not found) Homolog: 1kigh - READ ERROR (not found) Homolog: 1fxya - READ ERROR (not found) Homolog: 2ptn - READ ERROR (not found) Homolog: 1mcta - READ ERROR (not found) Homolog: 1trma - READ ERROR (not found) Homolog: 1a0ja - READ ERROR (not found) Homolog: 2tbs - READ ERROR (not found) Homolog: 1ab9 - READ ERROR (not found) Homolog: 1ton - READ ERROR (not found) Homolog: 2pka - READ ERROR (not found) Homolog: 1npma - READ ERROR (not found) Homolog: 1azza - READ ERROR (not found) Homolog: 3est - READ ERROR (not found) Homolog: 1a0la - READ ERROR (not found) Homolog: 1lmwb - READ ERROR (not found) Homolog: 1a5ia - READ ERROR (not found) Homolog: 1a5ha - READ ERROR (not found) Homolog: 1fuja - READ ERROR (not found) Homolog: 1hnee - READ ERROR (not found) Homolog: 1a7s - READ ERROR (not found) Homolog: 3rp2a - READ ERROR (not found) Homolog: 1klt - READ ERROR (not found) Homolog: 1dfpa - READ ERROR (not found) Homolog: 1sgt - READ ERROR (not found) ERROR: No homologs imported! PROGRAM_ERROR - |
4楼2011-01-24 16:59:59
5楼2011-01-24 17:01:53
6楼2011-01-24 21:46:47
7楼2011-01-25 16:23:35
偶也遇到同样 的问题，但没有解决，前辈能否指点一二 8楼2015-03-17 15:12:31
