| 查看: 1641 | 回复: 3 | |||
| 当前只显示满足指定条件的回帖，点击这里查看本话题的所有回帖 | |||
vip_zzc铜虫 (小有名气)
|
[交流]
【讨论】（急！！）如何用AMBER模拟RNA/DNA，关键是怎么处理输入文件！！
|
||
|
本人在模拟核酸过程中遇到非常棘手的问题。 目前用的版本是 AMBER8，教程上说10（或者10）以前的版本会报错，提示 有不能识别的原子。 Created a new atom named: H5'' within residue: .R Created a new atom named: H2' within residue: .R Created a new atom named: H2'' within residue: .R Added missing heavy atom: .R Added missing heavy atom: .R Created a new atom named: OP1 within residue: .R Created a new atom named: OP2 within residue: .R Created a new atom named: H5' within residue: .R Created a new atom named: H5'' within residue: .R Created a new atom named: H2' within residue: .R Created a new atom named: H2'' within residue: .R Added missing heavy atom: .R Added missing heavy atom: .R Created a new atom named: OP1 within residue: .R Created a new atom named: OP2 within residue: .R Created a new atom named: H5' within residue: .R Created a new atom named: H5'' within residue: .R Created a new atom named: H2' within residue: .R Created a new atom named: H2'' within residue: .R Added missing heavy atom: .R Added missing heavy atom: .R Created a new atom named: OP1 within residue: .R Created a new atom named: OP2 within residue: .R Created a new atom named: H5' within residue: .R Created a new atom named: H5'' within residue: .R Created a new atom named: H2' within residue: .R Created a new atom named: H2'' within residue: .R Created a new atom named: HO3' within residue: .R 但参看一些资料有人用AMBER6 都模拟出来了。。 AMBER是完全可以做出来的，关键是PDB输入文件的该如何处理。。 现在很着急,摸索了好久一点进展都没有.... 请教哪位有 用AMBER模拟过RNA/DNA的, 恳请能提供帮助,万分感谢!!!!! QQ:350282689 E-mial:vip_zzc@emails.bjut.edu.cn |
回复此楼» 猜你喜欢
论文终于录用啦！满足毕业条件了
已经有20人回复
-
不自信的我
已经有5人回复
-
磺酰氟产物，毕不了业了！
已经有4人回复
-
投稿Elsevier的杂志（返修），总是在选择OA和subscription界面被踢皮球
已经有8人回复
» 本主题相关价值贴推荐，对您同样有帮助:
- RNA样品中的未除尽基因组DNA
已经有10人回复
- 有关提取全血DNA和RNA问题。
已经有4人回复
- 提RNA的时候怎么才能避免ＤＮＡ污染呢？
已经有18人回复
- DNA/RNA抽提操作中用到的carrier RNA的分类、作用、原理？
已经有5人回复
- 有人做过人工microRNA以使目标基因沉默吗？求助~~
已经有5人回复
- 【求助/交流】异硫氰酸胍法提取植物RNA中DNA残留问题~回帖就送币！！！
已经有14人回复
- 【求助/交流】怎么判断提的DNA中有RNA 呢？
已经有12人回复
夏天的鱼
木虫 (小有名气)
- 应助: 0 (幼儿园)
- 金币: 2475.1
- 散金: 39
- 红花: 2
- 帖子: 269
- 在线: 106.2小时
- 虫号: 960429
- 注册: 2010-03-03
- 专业: 化学计量学与化学信息学
4楼2010-10-10 15:33:42