| 查看: 1244 | 回复: 5 | ||
| 当前只显示满足指定条件的回帖，点击这里查看本话题的所有回帖 | ||
sherry_zhang新虫 (初入文坛)
|
[求助]
Small RNA-seq原始数据怎么处理？
|
|
| 我现在有small RNA-Sequencing 的原始数据，fastq的数据格式的，我想得到miRNA 的ID名和表达信息，该怎么做啊！急求！ |
回复此楼» 猜你喜欢
290调剂生物0860
已经有32人回复
-
271求调剂
已经有28人回复
-
105500药学求调剂
已经有4人回复
-
274求调剂
已经有10人回复
-
335求调剂
已经有20人回复
-
化工学硕294分，求导师收留
已经有33人回复
-
290求调剂
已经有22人回复
-
291 求调剂
已经有36人回复
-
食品与营养（0955）271求调剂
已经有16人回复
-
22408 312求调剂
已经有10人回复
sherry_zhang
新虫 (初入文坛)
- 应助: 0 (幼儿园)
- 金币: 167.4
- 帖子: 15
- 在线: 5.7小时
- 虫号: 3279618
- 注册: 2014-06-17
- 专业: 基因表达调控与表观遗传学
4楼2015-11-04 16:59:51
yingyangyang 
木虫 (正式写手)
- 博学EPI: 1
- 应助: 2 (幼儿园)
- 金币: 870.4
- 散金: 1137
- 红花: 2
- 帖子: 702
- 在线: 83.2小时
- 虫号: 1079313
- 注册: 2010-08-21
- 专业: 生物化学
【答案】应助回帖
|
基于小RNA-Seq数据的植物miRNA预测工具 miR-PREFeR: an accurate, fast, and easy-to-use plant miRNA prediction tool using small RNA-Seq data. Abstract Summary: Plant microRNA prediction tools that utilize small RNA sequencing data are emerging quickly. These existing tools have at least one of the following problems: 1. high false positive rate; 2. long running time; 3. work only for genomes in their databases; 4. hard to install or use. We develop miR-PREFeR (miRNA PREdiction From small RNA-Seq data), which utilizes expression patterns of miRNA and follows the criteria for plant microRNA annotation to accurately predict plant miRNAs from one or more small RNA-Seq data samples of the same species. We tested miR-PREFeR on several plant species. The results show that miR-PREFeR is sensitive, accurate, fast, and has low memory footprint. Availability: https://github.com/hangelwen/miR-PREFeR http://bioinformatics.oxfordjour ... ics.btu380.abstract |
2楼2015-08-18 15:15:24
sherry_zhang
新虫 (初入文坛)
- 应助: 0 (幼儿园)
- 金币: 167.4
- 帖子: 15
- 在线: 5.7小时
- 虫号: 3279618
- 注册: 2014-06-17
- 专业: 基因表达调控与表观遗传学
3楼2015-08-21 09:13:58
5楼2015-11-05 07:43:56
5