24小时热门版块排行榜    

查看: 1216  |  回复: 5

sherry_zhang

新虫 (初入文坛)

[求助] Small RNA-seq原始数据怎么处理?

我现在有small RNA-Sequencing 的原始数据,fastq的数据格式的,我想得到miRNA 的ID名和表达信息,该怎么做啊!急求!
回复此楼

» 猜你喜欢

已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

yingyangyang

木虫 (正式写手)


【答案】应助回帖

基于小RNA-Seq数据的植物miRNA预测工具
miR-PREFeR: an accurate, fast, and easy-to-use plant miRNA prediction tool using small RNA-Seq data.

Abstract

Summary: Plant microRNA prediction tools that utilize small RNA sequencing data are emerging quickly. These existing tools have at least one of the following problems: 1. high false positive rate; 2. long running time; 3. work only for genomes in their databases; 4. hard to install or use. We develop miR-PREFeR (miRNA PREdiction From small RNA-Seq data), which utilizes expression patterns of miRNA and follows the criteria for plant microRNA annotation to accurately predict plant miRNAs from one or more small RNA-Seq data samples of the same species. We tested miR-PREFeR on several plant species. The results show that miR-PREFeR is sensitive, accurate, fast, and has low memory footprint.
Availability: https://github.com/hangelwen/miR-PREFeR

http://bioinformatics.oxfordjour ... ics.btu380.abstract
2楼2015-08-18 15:15:24
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

sherry_zhang

新虫 (初入文坛)

引用回帖:
2楼: Originally posted by yingyangyang at 2015-08-18 15:15:24
基于小RNA-Seq数据的植物miRNA预测工具
miR-PREFeR: an accurate, fast, and easy-to-use plant miRNA prediction tool using small RNA-Seq data.

Abstract

Summary: Plant microRNA prediction tools that ...

我做的是人类的,我想问一下可以用tophat和cufflinks做吗
3楼2015-08-21 09:13:58
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

sherry_zhang

新虫 (初入文坛)

我用tophat进行比对,为什么都没有比对上,用的是ensemble上的人类参考序列

发自小木虫Android客户端
4楼2015-11-04 16:59:51
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

陈爱中

新虫 (小有名气)

【答案】应助回帖

我怎么是公司整理好各个小rna相对积累量的excel表格…

发自小木虫IOS客户端
5楼2015-11-05 07:43:56
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

sherry_zhang

新虫 (初入文坛)

引用回帖:
5楼: Originally posted by 陈爱中 at 2015-11-05 07:43:56
我怎么是公司整理好各个小rna相对积累量的excel表格…

不知道啊,一直做不出来

发自小木虫Android客户端
6楼2015-11-18 15:11:40
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
相关版块跳转 我要订阅楼主 sherry_zhang 的主题更新
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[考研] 297求调剂 +11 戏精丹丹丹 2026-03-17 12/600 2026-03-21 17:47 by ColorlessPI
[考研] 0703化学297求调剂 +3 Daisy☆ 2026-03-20 3/150 2026-03-21 17:45 by ColorlessPI
[考研] 277材料科学与工程080500求调剂 +6 自由煎饼果子 2026-03-16 6/300 2026-03-21 17:21 by 学员8dgXkO
[考研] 333求调剂 +4 87639 2026-03-21 4/200 2026-03-21 17:18 by 学员8dgXkO
[考研] 化学调剂 +3 yzysaa 2026-03-21 3/150 2026-03-21 16:40 by macy2011
[考研] 求助 +4 梦里的无言 2026-03-21 5/250 2026-03-21 15:53 by ColorlessPI
[考研] 求调剂 +3 白QF 2026-03-21 3/150 2026-03-21 13:12 by zhukairuo
[考研] 南昌大学材料专硕311分求调剂 +6 77chaselx 2026-03-20 6/300 2026-03-21 07:24 by JourneyLucky
[考研] 083200学硕321分一志愿暨南大学求调剂 +3 innocenceF 2026-03-17 3/150 2026-03-21 02:35 by JourneyLucky
[考研] 328求调剂,英语六级551,有科研经历 +4 生物工程调剂 2026-03-17 8/400 2026-03-21 02:12 by JourneyLucky
[考研] 307求调剂 +10 冷笙123 2026-03-17 10/500 2026-03-21 01:54 by JourneyLucky
[考研] 考研调剂求学校推荐 +3 伯乐29 2026-03-18 5/250 2026-03-20 22:59 by JourneyLucky
[考研] 295复试调剂 +8 简木ChuFront 2026-03-19 8/400 2026-03-20 20:44 by zhukairuo
[考研] 288求调剂,一志愿华南理工大学071005 +5 ioodiiij 2026-03-17 5/250 2026-03-19 18:22 by zcl123
[考研] 286求调剂 +6 lemonzzn 2026-03-16 10/500 2026-03-19 14:31 by lemonzzn
[考研] 材料考研调剂 +3 xwt。 2026-03-19 3/150 2026-03-19 11:22 by w沐阳w
[考研] 328求调剂,英语六级551,有科研经历 +4 生物工程调剂 2026-03-16 12/600 2026-03-19 11:10 by 生物工程调剂
[考研] 0703化学336分求调剂 +6 zbzihdhd 2026-03-15 7/350 2026-03-18 09:53 by zhukairuo
[考研] 327求调剂 +6 拾光任染 2026-03-15 11/550 2026-03-15 22:47 by 拾光任染
[考研] 本科南京大学一志愿川大药学327 +3 麦田耕者 2026-03-14 3/150 2026-03-14 20:04 by 外星文明
信息提示
请填处理意见