24小时热门版块排行榜    

查看: 2168  |  回复: 4
当前只显示满足指定条件的回帖,点击这里查看本话题的所有回帖

白玉浴血

木虫 (正式写手)

[求助] 请问有人使用过packmol吗?能否给看一下这个问题要怎么解决呢?急求!!! 已有1人参与

Restraint-only function value:    24244.7965544659     
  ERROR: Packmol was unable to put the molecules
         in the desired regions even without
         considering distance tolerances.
         Probably there is something wrong with
         the constraints, since it seems that
         the molecules cannot satisfy them at
         at all.
         Please check the spatial constraints and
         try again.
  >The maximum number of cycles (         200 ) was achieved.
   You may try increasing it with the nloop keyword, as in: nloop 1000
回复此楼
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

白玉浴血

木虫 (正式写手)

引用回帖:
2楼: Originally posted by 对天空说lrj at 2015-05-29 10:38:31
tolerance改一下试试?

我改到1000也是这样
4楼2015-05-29 10:52:05
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
查看全部 5 个回答

对天空说lrj

金虫 (正式写手)

tolerance改一下试试?
我若盛开,蝴蝶自来
2楼2015-05-29 10:38:31
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

白玉浴血

木虫 (正式写手)

引用回帖:
2楼: Originally posted by 对天空说lrj at 2015-05-29 10:38:31
tolerance改一下试试?

请问这个要在什么地方修改呢

# Double layered vesicle with water inside and outside
#

tolerance 2.0

structure DRGNOH-SDS.PDB
  number 74
  atoms 1
    inside sphere 0. 0. 0. 28.
  end atoms
  atoms 7
    outside sphere 0. 0. 0. 36.
  end atoms
end structure

output outerSDS-2.pdb
3楼2015-05-29 10:48:59
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

玖月之殇

新虫 (初入文坛)

【答案】应助回帖

这个是分子定位不合理的缘故,就是分子本身有20A 你定义的连个原子间距是18A 那他就是错的了,可以尝试着改下,不可能你选定一个距离他就是对的
5楼2015-08-07 10:20:24
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[公派出国] 售SCI一区T0P文章,我:8.O55.1.O.54,科目全,可十急 +4 Z7qfCsdIiD1T 2026-11-10 5/250 2026-11-12 02:45 by 9fOTqj074tIg
[考研] 售SCI一区文章,我:8.O.55.1.O.54,科目齐全,可伽急 +4 Z7qfCsdIiD1T 2026-11-10 6/300 2026-11-12 02:25 by 9fOTqj074tIg
[教师之家] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +4 czAiolzR0IJC 2026-11-10 5/250 2026-11-12 02:12 by 9fOTqj074tIg
[基金申请] 售SCI一区T0P文章,我:8.O.55.1.O.54,科目齐全,可+急 +3 czAiolzR0IJC 2026-11-10 6/300 2026-11-12 02:12 by 9fOTqj074tIg
[硕博家园] 售SCI文章,我:8O.5.5.1O.54,科目全,可十急 +3 G2rhSvqvhNzl 2026-11-10 4/200 2026-11-12 02:01 by 9fOTqj074tIg
[考研] 售SCI一区T0P文章,我:8O.55.1.O.54,科目全,可伽急 +3 G2rhSvqvhNzl 2026-11-10 5/250 2026-11-12 02:01 by 9fOTqj074tIg
[考研] 售SCI一区文章,我:8O5.5.1.O5.4,科目全,可伽急 +3 G2rhSvqvhNzl 2026-11-10 5/250 2026-11-12 01:50 by 9fOTqj074tIg
[考研] 售SCI一区T0P文章,我:8.O.55.1.O.54,科目齐全,可+急 +4 C6CRn66RYYXS 2026-11-10 5/250 2026-11-12 01:39 by 9fOTqj074tIg
[考研] 售SCI一区T0P文章,我:8.O.55.1.O.5.4,科目全,可+急 +4 C6CRn66RYYXS 2026-11-10 5/250 2026-11-12 01:25 by 9fOTqj074tIg
[考博] 售SCI一区文章,我:8.O.55.1.O.54,科目齐全,可伽急 +3 FChKX8meu1ds 2026-11-09 6/300 2026-11-12 01:06 by 9fOTqj074tIg
[基金申请] 售SCI一区T0P文章,我:8.O.55.1.O.54,科目齐全,可+急 +5 FChKX8meu1ds 2026-11-09 6/300 2026-11-12 01:06 by 9fOTqj074tIg
[考博] 售SCI一区T0P文章,我:8O.55.1.O.5.4,科目齐全,可+急 +4 FChKX8meu1ds 2026-11-09 7/350 2026-11-12 00:55 by 9fOTqj074tIg
[公派出国] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +4 FChKX8meu1ds 2026-11-09 8/400 2026-11-12 00:55 by 9fOTqj074tIg
[教师之家] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +6 FChKX8meu1ds 2026-11-09 10/500 2026-11-12 00:46 by 9fOTqj074tIg
[教师之家] 售SCI一区T0P文章,我:8.O55.1.O.54,科目全,可十急 +6 cqv1zKnzd7hr 2026-11-09 7/350 2026-11-12 00:44 by 9fOTqj074tIg
[公派出国] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +5 zSbvVX9JFl9J 2026-11-09 7/350 2026-11-12 00:33 by 9fOTqj074tIg
[基金申请] 售SCI一区T0P文章,我:8O.55.1.O.54,科目全,可伽急 +3 C6CRn66RYYXS 2026-11-10 4/200 2026-11-11 17:53 by TgvkbZZl9tqB
[考研] 售一区SCI文章T0P,我:8O.551.O54,科目全,可十急 +5 zSbvVX9JFl9J 2026-11-09 6/300 2026-11-11 16:47 by TgvkbZZl9tqB
[硕博家园] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +4 zSbvVX9JFl9J 2026-11-09 7/350 2026-11-11 16:41 by TgvkbZZl9tqB
[公派出国] 售SCI一区文章,我:8.O.55.1.O.54,科目齐全,可伽急 +4 5sJFDKp2kwuI 2026-11-06 8/400 2026-11-09 00:14 by l48hFd8Nwae2
信息提示
请填处理意见