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jiaoyixiong: ½ð±Ò+2, ¹ÄÀø½»Á÷ 2012-11-20 14:42:35
zhongyunxia: ½ð±Ò+5 2012-11-20 15:45:15
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2Â¥: Originally posted by wally8962 at 2012-11-20 11:42:52
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