24СʱÈÈÃŰæ¿éÅÅÐаñ    

²é¿´: 1459  |  »Ø¸´: 3

zhongyunxia

гæ (СÓÐÃûÆø)

[ÇóÖú] Çë½ÌVMDÖÐmeasure hbonds

Çë½Ì´ó¼Ò£¬³õÓÃVMDÖÐmeasure hbonds¼ÆËãÇâ¼ü£¬ÌåϵΪһ¸öôÈËáÌåϵ£¬¹©ÌåºÍÊÜÌå·Ö±ðΪOHºÍôÊ»ùO£¬ÔÚindexÖеıàºÅ·Ö±ðÊǵÚ6×éºÍµÚ5×é¡£
ÔÚTKconsoleÖУ¬ÕâÑùдµ½£¬´ó¼Ò¿´ÊÇ·ñÓдí
Ê×ÏȰ´ÕÕÊֲᣬselection1Êǹ©Ì壬selection2ÊÇÊÜÌå
ËùÒÔ set sel1 [atomselect  top "index 6"]
atomselect0
set sel2 [atomselect top "index 5"]
atomselect 1
measure hbonds 3.5 30 $sel1 $sel2 »Ø³µºó³öÏÖÈý¸öÔ²À¨ºÅ
{} {}  {}
Çë½Ì´ó¼Ò£¬ÕâÊÇʲôÒâË¼ÄØ£¿¶øÇÒÎÒÊäÈë$sel1 $sel2ʱ×Öĸ±äºì£¬ÊdzöÏÖÓï·¨´íÎóÁËÂ𣿾ÍÊÇÑ¡Ôñ¹©ÌåºÍÊÜÌåµÄÓï¾ä¶ÔÂð£¿ÈçÏÂÊÇÎÒµÄpdb¼°indexÎļþ£¬Ï£Íû´ó¼Ò°ï棬лл´ó¼Ò£¬ÐÂÊÖ³õµ½£¬Íû²»Áߴͽ̣¬¸Ð¼¤²»¾¡£¡
»Ø¸´´ËÂ¥

» ±¾Ìû¸½¼þ×ÊÔ´Áбí

  • »¶Ó­¼à¶½ºÍ·´À¡£ºÐ¡Ä¾³æ½öÌṩ½»Á÷ƽ̨£¬²»¶Ô¸ÃÄÚÈݸºÔð¡£
    ±¾ÄÚÈÝÓÉÓû§×ÔÖ÷·¢²¼£¬Èç¹ûÆäÄÚÈÝÉæ¼°µ½ÖªÊ¶²úȨÎÊÌ⣬ÆäÔðÈÎÔÚÓÚÓû§±¾ÈË£¬Èç¶Ô°æÈ¨ÓÐÒìÒ飬ÇëÁªÏµÓÊÏ䣺xiaomuchong@tal.com
  • ¸½¼þ 1 : md.pdb
  • 2012-11-19 15:44:04, 148.19 K
  • ¸½¼þ 2 : index.ndx
  • 2012-11-19 15:44:08, 40.55 K

» ÊÕ¼±¾ÌûµÄÌÔÌûר¼­ÍƼö

VMD Èí¼þ

» ²ÂÄãϲ»¶

» ±¾Ö÷ÌâÏà¹Ø¼ÛÖµÌùÍÆ¼ö£¬¶ÔÄúͬÑùÓаïÖú:

ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

wally8962

ľ³æ (ÖøÃûдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï ¡ï ¡ï ¡ï ¡ï ¡ï ¡ï
¸Ðл²ÎÓ룬ӦÖúÖ¸Êý +1
jiaoyixiong: ½ð±Ò+2, ¹ÄÀø½»Á÷ 2012-11-20 14:42:35
zhongyunxia: ½ð±Ò+5 2012-11-20 15:45:15
±äºì±íʾÊDZäÁ¿
Ó¦¸ÃÊÇûÓÐÕÒµ½Çâ¼ü
2Â¥2012-11-20 11:42:52
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

zhongyunxia

гæ (СÓÐÃûÆø)

ÒýÓûØÌû:
2Â¥: Originally posted by wally8962 at 2012-11-20 11:42:52
±äºì±íʾÊDZäÁ¿
Ó¦¸ÃÊÇûÓÐÕÒµ½Çâ¼ü

ÄÇÔõôѡÔñÎÒÏëÑо¿µÄÔ­×ÓÄØ£¿Ð»Ð»
3Â¥2012-11-20 15:45:41
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

wally8962

ľ³æ (ÖøÃûдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï ¡ï
chaizhm: ½ð±Ò+2, лл~ 2012-11-20 21:55:50
ÒýÓûØÌû:
3Â¥: Originally posted by zhongyunxia at 2012-11-20 15:45:41
ÄÇÔõôѡÔñÎÒÏëÑо¿µÄÔ­×ÓÄØ£¿Ð»Ð»...

ÕýÈ·ÃèÊöÄãµÄÑо¿¶ÔÏó
±ÈÈ磬ÄãËùÓõÄindex 6,ÊÇÓÃÐòºÅÃèÊöÄãÑ¡ÔñµÄ²¿·Ö
»òÕßÓá°segment 5 and  resid 6 and name O¡±µÈµÈ
·­ÔÄvmd user guide£¬Ï¸¶Áatomselect²¿·Ö
4Â¥2012-11-20 16:14:56
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû
Ïà¹Ø°æ¿éÌø×ª ÎÒÒª¶©ÔÄÂ¥Ö÷ zhongyunxia µÄÖ÷Ìâ¸üÐÂ
×î¾ßÈËÆøÈÈÌûÍÆ¼ö [²é¿´È«²¿] ×÷Õß »Ø/¿´ ×îºó·¢±í
[»ù½ðÉêÇë] ÈËÆø²»ÐÐÁË +9 fansofjerry 2026-08-21 9/450 2026-08-24 17:48 by zhaozhengxin
[»ù½ðÉêÇë] ûÓÐÈκÎÏûÏ¢-ÊDz»ÊǾÍÁ¹ÁË +6 ͼÀ²Í¼À² 2026-08-24 6/300 2026-08-24 17:44 by ССºì·«
[»ù½ðÉêÇë] 2026¹ú×ÔÈ»º¯ÆÀ·Ñµ½ÕË +17 ÑòÑü°å 2026-08-21 19/950 2026-08-24 16:52 by iaeyuan
[»ù½ðÉêÇë] ½¨Òé»ù½ð·¢²¼Ìáǰ¸ø³öÃ÷È·µÄʱ¼äµã +13 kulium 2026-08-21 16/800 2026-08-24 16:27 by superceng
[»ù½ðÉêÇë] ÎÒÃæÉÏÍêµ°ÁË +8 ÇÒÌý»¢Ð¥ 2026-08-20 9/450 2026-08-24 13:52 by zzuzxg
[»ù½ðÉêÇë] ÈÃÎÒÖÐÒ»¸öÃæÉϰɣ¡ +13 ´óƼ1987 2026-08-20 16/800 2026-08-24 10:23 by ̫ɵÁË
[»ù½ðÉêÇë] ¿ÆÑй¶ùÌ«ÄÑÁË +18 ÎÒ4´ó°×²Ë 2026-08-20 19/950 2026-08-24 09:47 by ¿­¶÷¹ãÊ¢´ß»¯·ÖÎ
[»ù½ðÉêÇë] 2026ÄêµÄ¹ú¼ÒÉç¿Æ»ù½ðÏîĿͨѶÆÀÉóµÄйæÔòÓëж¯Ïò¡¢ÐÂÌôÕ½ +4 process2012 2026-08-23 5/250 2026-08-23 19:58 by jurkat.1640
[»ù½ðÉêÇë] ½ñÌì·Å°ñÂ𣿠+15 ²¼²¼ºÍÒ»¶þ 2026-08-19 16/800 2026-08-23 09:55 by ÕÅ´ºÉú
[»ù½ðÉêÇë] 93BebMhtakhǰºó11λ¿ªÍ·¶¼ÊÇ´óд +7 ÇÒÌý»¢Ð¥ 2026-08-17 8/400 2026-08-22 21:55 by ҽѧÀÏÄк¢
[»ù½ðÉêÇë] Ö»ÓÐÿÄêÕâÖÖʱºòÀ´¹ä¹äСľ³æ +24 yaoyewhu2008 2026-08-20 26/1300 2026-08-22 17:43 by kammury
[»ù½ðÉêÇë] filecode£¬4¸öjtjcÁË +13 ziyangfang 2026-08-19 16/800 2026-08-22 17:08 by WH3796
[»ù½ðÉêÇë] ½ñÌì»ù½ð»á³ö½á¹ûÂð£¿20260819 +16 kkkl_v 2026-08-19 17/850 2026-08-22 16:12 by °¢²¼Abu
[»ù½ðÉêÇë] ¿´À´½ñÌì²»»á·Å°ñÁË£¿ +8 chengyan1220 2026-08-21 11/550 2026-08-21 17:52 by dcqxinyang
[»ù½ðÉêÇë] ʱ¼ä´ÁÓÖ±äÁË +13 wuchongjun 2026-08-20 19/950 2026-08-21 17:21 by ×Ïɼ´¼
[»ù½ðÉêÇë] Ó¦¸ÃÊÇÏÂÖÜÈý26ÈÕ¹«²¼Á˰ɣ¿ +4 ¹þ¹þ¸ò£¿ 2026-08-21 4/200 2026-08-21 10:58 by Vivilian
[ÂÛÎÄͶ¸å] Ͷ¸å×Éѯ +5 wwm09 2026-08-17 7/350 2026-08-21 10:11 by ÆÚ¿¯ÂÛÎİïÊÖ
[»ù½ðÉêÇë] ½ñÌì·Å°ñûϷÁ衃 +9 yuleib84 2026-08-19 11/550 2026-08-21 10:06 by gltch
[»ù½ðÉêÇë] ÖØÒªÏûÏ¢£¬ÖÐÎçϵͳÔÚά»¤ +11 yuleib84 2026-08-18 12/600 2026-08-20 11:09 by xskun
[»ù½ðÉêÇë] ½ñÌìά»¤ÏµÍ³Î¬»¤ ×£ËùÓÐÈË ¸ßÖÐ +8 gjjjzhong 2026-08-18 9/450 2026-08-18 13:01 by ¼ÒÓëÔ¶·½
ÐÅÏ¢Ìáʾ
ÇëÌî´¦ÀíÒâ¼û