²é¿´: 1302  |  »Ø¸´: 3

zhongyunxia

гæ (СÓÐÃûÆø)

[ÇóÖú] Çë½ÌVMDÖÐmeasure hbonds

Çë½Ì´ó¼Ò£¬³õÓÃVMDÖÐmeasure hbonds¼ÆËãÇâ¼ü£¬ÌåϵΪһ¸öôÈËáÌåϵ£¬¹©ÌåºÍÊÜÌå·Ö±ðΪOHºÍôÊ»ùO£¬ÔÚindexÖеıàºÅ·Ö±ðÊǵÚ6×éºÍµÚ5×é¡£
ÔÚTKconsoleÖУ¬ÕâÑùдµ½£¬´ó¼Ò¿´ÊÇ·ñÓдí
Ê×ÏȰ´ÕÕÊֲᣬselection1Êǹ©Ì壬selection2ÊÇÊÜÌå
ËùÒÔ set sel1 [atomselect  top "index 6"]
atomselect0
set sel2 [atomselect top "index 5"]
atomselect 1
measure hbonds 3.5 30 $sel1 $sel2 »Ø³µºó³öÏÖÈý¸öÔ²À¨ºÅ
{} {}  {}
Çë½Ì´ó¼Ò£¬ÕâÊÇʲôÒâË¼ÄØ£¿¶øÇÒÎÒÊäÈë$sel1 $sel2ʱ×Öĸ±äºì£¬ÊdzöÏÖÓï·¨´íÎóÁËÂ𣿾ÍÊÇÑ¡Ôñ¹©ÌåºÍÊÜÌåµÄÓï¾ä¶ÔÂð£¿ÈçÏÂÊÇÎÒµÄpdb¼°indexÎļþ£¬Ï£Íû´ó¼Ò°ï棬лл´ó¼Ò£¬ÐÂÊÖ³õµ½£¬Íû²»Áߴͽ̣¬¸Ð¼¤²»¾¡£¡
»Ø¸´´ËÂ¥

» ±¾Ìû¸½¼þ×ÊÔ´Áбí

  • »¶Ó­¼à¶½ºÍ·´À¡£ºÐ¡Ä¾³æ½öÌṩ½»Á÷ƽ̨£¬²»¶Ô¸ÃÄÚÈݸºÔð¡£
    ±¾ÄÚÈÝÓÉÓû§×ÔÖ÷·¢²¼£¬Èç¹ûÆäÄÚÈÝÉæ¼°µ½ÖªÊ¶²úȨÎÊÌ⣬ÆäÔðÈÎÔÚÓÚÓû§±¾ÈË£¬Èç¶Ô°æÈ¨ÓÐÒìÒ飬ÇëÁªÏµÓÊÏ䣺xiaomuchong@tal.com
  • ¸½¼þ 1 : md.pdb
  • 2012-11-19 15:44:04, 148.19 K
  • ¸½¼þ 2 : index.ndx
  • 2012-11-19 15:44:08, 40.55 K

» ÊÕ¼±¾ÌûµÄÌÔÌûר¼­ÍƼö

VMD Èí¼þ

» ²ÂÄãϲ»¶

» ±¾Ö÷ÌâÏà¹Ø¼ÛÖµÌùÍÆ¼ö£¬¶ÔÄúͬÑùÓаïÖú:

ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

wally8962

ľ³æ (ÖøÃûдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï ¡ï ¡ï ¡ï ¡ï ¡ï ¡ï
¸Ðл²ÎÓ룬ӦÖúÖ¸Êý +1
jiaoyixiong: ½ð±Ò+2, ¹ÄÀø½»Á÷ 2012-11-20 14:42:35
zhongyunxia: ½ð±Ò+5 2012-11-20 15:45:15
±äºì±íʾÊDZäÁ¿
Ó¦¸ÃÊÇûÓÐÕÒµ½Çâ¼ü
2Â¥2012-11-20 11:42:52
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

zhongyunxia

гæ (СÓÐÃûÆø)

ÒýÓûØÌû:
2Â¥: Originally posted by wally8962 at 2012-11-20 11:42:52
±äºì±íʾÊDZäÁ¿
Ó¦¸ÃÊÇûÓÐÕÒµ½Çâ¼ü

ÄÇÔõôѡÔñÎÒÏëÑо¿µÄÔ­×ÓÄØ£¿Ð»Ð»
3Â¥2012-11-20 15:45:41
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

wally8962

ľ³æ (ÖøÃûдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï ¡ï
chaizhm: ½ð±Ò+2, лл~ 2012-11-20 21:55:50
ÒýÓûØÌû:
3Â¥: Originally posted by zhongyunxia at 2012-11-20 15:45:41
ÄÇÔõôѡÔñÎÒÏëÑо¿µÄÔ­×ÓÄØ£¿Ð»Ð»...

ÕýÈ·ÃèÊöÄãµÄÑо¿¶ÔÏó
±ÈÈ磬ÄãËùÓõÄindex 6,ÊÇÓÃÐòºÅÃèÊöÄãÑ¡ÔñµÄ²¿·Ö
»òÕßÓá°segment 5 and  resid 6 and name O¡±µÈµÈ
·­ÔÄvmd user guide£¬Ï¸¶Áatomselect²¿·Ö
4Â¥2012-11-20 16:14:56
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû
Ïà¹Ø°æ¿éÌø×ª ÎÒÒª¶©ÔÄÂ¥Ö÷ zhongyunxia µÄÖ÷Ìâ¸üÐÂ
×î¾ßÈËÆøÈÈÌûÍÆ¼ö [²é¿´È«²¿] ×÷Õß »Ø/¿´ ×îºó·¢±í
[¿¼ÑÐ] 292Çóµ÷¼Á +7 ¶ì¶ì¶ì¶î¶î¶î¶î¶ 2026-03-25 8/400 2026-03-26 00:22 by Dyhoer
[¿¼ÑÐ] ±±¿Æ281ѧ˶²ÄÁÏÇóµ÷¼Á +14 tcxiaoxx 2026-03-20 16/800 2026-03-25 23:14 by peike
[¿¼ÑÐ] 085600 ²ÄÁÏÓ뻯¹¤ 329·ÖÇóµ÷¼Á +8 Mr. Z 2026-03-25 8/400 2026-03-25 23:00 by peike
[¿¼ÑÐ] 08¹¤Ñ§µ÷¼Á +13 Óû§573181 2026-03-20 18/900 2026-03-25 22:00 by zbssa
[¿¼ÑÐ] 26¿¼ÑÐ-291·Ö-ÏÃÃÅ´óѧ£¨085601£©-ÈáÐÔµç×ÓѧԺ²ÄÁϹ¤³ÌרҵÇóµ÷¼Á +3 min3 2026-03-24 4/200 2026-03-25 18:22 by xcjcqu
[¿¼ÑÐ] 293Çóµ÷¼Á +7 ¼ÓÒ»Ò»¾Å 2026-03-24 7/350 2026-03-25 12:02 by userper
[¿¼ÑÐ] Ò»Ö¾Ô¸211 ³õÊÔ270·Ö Çóµ÷¼Á +5 ¹ÈÓêÉϰ¶ 2026-03-23 6/300 2026-03-24 16:32 by laoshidan
[¿¼ÑÐ] Ò»Ö¾Ô¸±±¾©»¯¹¤´óѧ²ÄÁÏÓ뻯¹¤ 264·Ö¸÷¿Æ¹ýAÇø¹ú¼ÒÏß +3 ¹þ¹þ157349 2026-03-21 3/150 2026-03-24 14:11 by zhyzzh
[¿¼ÑÐ] ¡¾Ë«Ò»Á÷ԺУÐÂÄÜÔ´¡¢»·¾³²ÄÁÏ£¬²ÄÁϼӹ¤ÓëÄ£ÄâÕÐÊÕ´óÁ¿µ÷¼Á¡¿ +4 Higraduate 2026-03-22 7/350 2026-03-24 11:23 by ÖÖ´óÊ÷
[¿¼ÑÐ] 344Çóµ÷¼Á +3 desto 2026-03-24 3/150 2026-03-24 10:09 by ²«»÷518
[¿¼ÑÐ] »¯Ñ§308·ÖÇóµ÷¼Á +3 ÄãºÃÃ÷ÌìÄãºÃ 2026-03-23 3/150 2026-03-23 20:11 by macy2011
[¿¼ÑÐ] 336Çóµ÷¼Á +4 ÊÕµ½VS 2026-03-20 4/200 2026-03-23 19:02 by macy2011
[¿¼ÑÐ] ÉúÎïѧһ־Ը985£¬·ÖÊý349Çóµ÷¼Á +6 zxts12 2026-03-21 9/450 2026-03-23 18:37 by macy2011
[¿¼ÑÐ] ¹¤¿Æ0856Çóµ÷¼Á +5 ãåÎö͡͡ 2026-03-21 5/250 2026-03-23 17:56 by º£ÉªÞ±-
[¿¼ÑÐ] 315·Ö£¬³ÏÇóµ÷¼Á£¬²ÄÁÏÓ뻯¹¤085600 +3 13756423260 2026-03-22 3/150 2026-03-22 20:11 by edmund7
[¿¼ÑÐ] 269ר˶Çóµ÷¼Á +6 ½ð¶÷±´ 2026-03-21 6/300 2026-03-22 14:31 by ColorlessPI
[¿¼ÑÐ] Ò»Ö¾Ô¸±±¾©»¯¹¤´óѧ070300 ѧ˶336Çóµ÷¼Á +5 vvÃÔ 2026-03-21 8/400 2026-03-22 14:20 by ColorlessPI
[¿¼ÑÐ] 085601µ÷¼Á 358·Ö +3 zzzzggh 2026-03-20 4/200 2026-03-21 10:21 by luoyongfeng
[¿¼ÑÐ] Ò»Ö¾Ô¸ËÕÖÝ´óѧ²ÄÁÏÇóµ÷¼Á£¬×Ü·Ö315£¨Ó¢Ò»£© +5 sbdksD 2026-03-19 5/250 2026-03-20 22:10 by luoyongfeng
[¿¼ÑÐ] Ò»Ö¾Ô¸Î÷ÄϽ»Í¨ ר˶ ²ÄÁÏ355 ±¾¿ÆË«·Ç Çóµ÷¼Á +5 Î÷ÄϽ»Í¨×¨²Ä355 2026-03-19 5/250 2026-03-20 21:10 by JourneyLucky
ÐÅÏ¢Ìáʾ
ÇëÌî´¦ÀíÒâ¼û