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csfn

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[交流] 【求助】100金币求助1个6个原子的ccsd(t)单点能计算

希望高手帮忙,用如下输入文件计算时候,出现502错误。加上xqc计算的时候,出现508错误死掉Error termination via Lnk1e in /export/home/g03 nda-exe/l508.exel
希望有朋友能帮忙指点下。急需这个能量
CODE:
%chk=NN2FeO-cs-3.chk
%nprocshared=4
%mem=500MW
%rwf=1,1990mb,2,1990mb,3,1990mb,4,1990mb,5,1990mb,6,1990mb
# ccsd(t,maxcycle=300)/6-311+g(d) scf(maxcycle=200) test nosymm

Title Card Required

0 3
Fe                -0.03212906    0.44447196   -0.10709781
N                 -1.26584642   -0.86991489   -0.01031481
N                  1.55875687   -0.51694044   -0.00668081
O                 -0.54419679    1.93529518    0.18492521
N                 -2.15779363   -1.55619275    0.09039120
N                  2.60615887   -0.91961369    0.11305320

引用回帖:
计算先用bp86/6311G*优化,然后读入chk文件,用ccsd(t)/6311G*单点计算,报错如下:

******************************************
Gaussian 03:  AM64L-G03RevD.01 13-Oct-2005
                12-Dec-2010
******************************************
%chk=m3bp86opt.chk
%nprocshared=4
Will use up to    4 processors via shared memory.
%mem=400MW
%rwf=1,1990mb,2,1990mb,3,1990mb,4,1990mb,5,1990mb,6,1990mb
----------------------------------------------------------------------
# ccsd(t,maxcyc=333)/6-311+g(d) scf(maxcycle=555) geom=check guess=rea
d
----------------------------------------------------------------------
1/29=2,38=1/1;
2/40=1/2;
3/5=4,6=6,7=11,11=9,16=1,25=1,30=1/1,2,3;
4/5=1/1;
5/5=2,7=555,38=6/2;
8/6=7,9=120000,10=2,27=1564999680/1,4;
9/5=7,6=333,14=2,27=1564999680/13;
6/7=2,8=2,9=2,10=2/1;
99/5=1,9=1/99;
-------------------
Title Card Required
-------------------
Redundant internal coordinates taken from checkpoint file:
m3bp86opt.chk
Charge =  0 Multiplicity = 3
Fe,0,0.0226601764,0.1864275665,0.0262809173
N,0,0.0202650182,0.0167807499,1.8234765312
N,0,1.8331063701,0.010407751,-0.369730851
O,0,-1.2857012235,0.831050927,-0.6392849237
N,0,-0.1503848176,-0.0189961357,2.9399421138
N,0,2.8818766172,0.0006213368,-0.7862326103
Recover connectivity data from disk.
                          Input orientation:                          
---------------------------------------------------------------------
Center     Atomic     Atomic              Coordinates (Angstroms)
Number     Number      Type              X           Y           Z
---------------------------------------------------------------------
    1         26             0        0.022660    0.186428    0.026281
    2          7             0        0.020265    0.016781    1.823477
    3          7             0        1.833106    0.010408   -0.369731
    4          8             0       -1.285701    0.831051   -0.639285
    5          7             0       -0.150385   -0.018996    2.939942
    6          7             0        2.881877    0.000621   -0.786233
---------------------------------------------------------------------
                    Distance matrix (angstroms):
                    1          2          3          4          5
     1  Fe   0.000000
     2  N    1.805186   0.000000
     3  N    1.861592   2.845451   0.000000
     4  O    1.603224   2.904097   3.236213   0.000000
     5  N    2.926015   1.129999   3.858631   3.849986   0.000000
     6  N    2.978224   3.872940   1.128489   4.252048   4.804100
                    6
     6  N    0.000000
Stoichiometry    FeN4O(3)
Framework group  C1[X(FeN4O)]
Deg. of freedom    12
Full point group                 C1
Largest Abelian subgroup         C1      NOp   1
Largest concise Abelian subgroup C1      NOp   1
                         Standard orientation:                        
---------------------------------------------------------------------
Center     Atomic     Atomic              Coordinates (Angstroms)
Number     Number      Type              X           Y           Z
---------------------------------------------------------------------
    1         26             0       -0.032400    0.444952   -0.106911
    2          7             0       -1.265571   -0.869714   -0.008731
    3          7             0        1.557991   -0.517452   -0.007119
    4          8             0       -0.543139    1.936445    0.184502
    5          7             0       -2.156470   -1.557903    0.089206
    6          7             0        2.605123   -0.920691    0.112882
---------------------------------------------------------------------


…………………………


Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Restarting incremental Fock formation.
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Restarting incremental Fock formation.
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Matrix for removal 16 Erem= -1554.96348757654     Crem= 0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Restarting incremental Fock formation.
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
Rare condition: small coef for last iteration:  0.000D+00
>>>>>>>>>> Convergence criterion not met.
SCF Done:  E(UHF) =  -1554.96374932     A.U. after  556 cycles
             Convg  =    0.1593D-03             -V/T =  1.9997
             S**2   =   2.9433
Annihilation of the first spin contaminant:
S**2 before annihilation     2.9433,   after     2.4329
Convergence failure -- run terminated.
Error termination via Lnk1e in /export/home/caocao/g03/linda-exe/l502.exel at Sun Dec 12 16:13:40 2010.
Job cpu time:  0 days  0 hours 45 minutes 46.6 seconds.
File lengths (MBytes):  RWF=     31 Int=      0 D2E=      0 Chk=      8 Scr=      1

[ Last edited by csfn on 2010-12-12 at 16:05 ]
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yongma2008

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csfn(金币+1):呵呵 2010-12-14 13:46:25
不懂,来学习一下,最近做一个project,也是用ccsd,真贵啊
16楼2010-12-13 20:13:54
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查看全部 17 个回答

fooo

金虫 (正式写手)


★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★
小木虫(金币+0.5):给个红包,谢谢回帖交流
csfn(金币+5):非常谢谢,故意加大内存设置的 2010-12-12 16:00:02
csfn(金币+10):非常谢谢你尝试计算测试:-) 2010-12-12 16:02:33
问一下你的机器配置是什么?我简单试了一下,我的电脑是算不了,把内存设置去掉就能算了,所以你的内存似乎设的太大。
引用回帖:
Originally posted by csfn at 2010-12-12 13:56:19:
希望高手帮忙,用如下输入文件计算时候,出现502错误。加上xqc计算的时候,出现508错误死掉Error termination via Lnk1e in /export/home/g03 nda-exe/l508.exel
希望有朋友能帮忙指点下。急需这个能量

[co ...

2楼2010-12-12 14:30:47
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mscic

金虫 (正式写手)


★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★
小木虫(金币+0.5):给个红包,谢谢回帖交流
csfn(金币+10):机器能完成c2v结构5重态的计算呢 2010-12-12 16:01:23
小红豆(金币+5):感谢交流 2010-12-14 15:40:16
引用回帖:
Originally posted by fooo at 2010-12-12 14:30:47:
问一下你的机器配置是什么?我简单试了一下,我的电脑是算不了,把内存设置去掉就能算了,所以你的内存似乎设的太大。


最好输出文件的最后几行给出来,给出的信息越多越好。

真有可能是你的机器完成不了这个作业。

再就是MP2,CCSD等方法计算的过程中对硬盘的需要比较大,可以参考HELP中的Efficiency Considerations。
3楼2010-12-12 15:25:37
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erylingjet

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小木虫(金币+0.5):给个红包,谢谢回帖交流
csfn(金币+30):感谢计算上的帮忙 2010-12-12 16:01:52
小红豆(金币+5):感谢分享 2010-12-14 15:40:28
引用回帖:
Originally posted by fooo at 2010-12-12 14:30:47:
问一下你的机器配置是什么?我简单试了一下,我的电脑是算不了,把内存设置去掉就能算了,所以你的内存似乎设的太大。


这个跟内存没有任何关系,系统足够大,就是在913死掉
4楼2010-12-12 15:58:20
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简单回复
2010-12-12 16:02  
小木虫(金币+0.5):给个红包,谢谢回帖交流
csfn(金币+20):非常谢谢:-) 2010-12-12 16:06:33
引用回帖:
****************************************** Gaussian 03: AM64L-G03RevD.01 13-Oct-2005 12-Dec-2010 ****************************************** %chk=m3bp86opt.chk %nprocshared=4 Will use up to 4 processors via shared memory. %mem=400MW %rwf=1,1990mb,2,1990mb,3,1990mb,4,1990mb,5,1990mb,6,1990mb ---------------------------------------------------------------------- # ccsd(t,maxcyc=333)/6-311+g(d) scf(maxcycle=555) geom=check guess=rea d ---------------------------------------------------------------------- 1/29=2,38=1/1; 2/40=1/2; 3/5=4,6=6,7=11,11=9,16=1,25=1,30=1/1,2,3; 4/5=1/1; 5/5=2,7=555,38=6/2; 8/6=7,9=120000,10=2,27=1564999680/1,4; 9/5=7,6=333,14=2,27=1564999680/13; 6/7=2,8=2,9=2,10=2/1; 99/5=1,9=1/99; ------------------- Title Card Required ------------------- Redundant internal coordinates taken from checkpoint file: m3bp86opt.chk Charge = 0 Multiplicity = 3 Fe,0,0.0226601764,0.1864275665,0.0262809173 N,0,0.0202650182,0.0167807499,1.8234765312 N,0,1.8331063701,0.010407751,-0.369730851 O,0,-1.2857012235,0.831050927,-0.6392849237 N,0,-0.1503848176,-0.0189961357,2.9399421138 N,0,2.8818766172,0.0006213368,-0.7862326103 Recover connectivity data from disk. Input orientation: --------------------------------------------------------------------- Center Atomic Atomic Coordinates (Angstroms) Number Number Type X Y Z --------------------------------------------------------------------- 1 26 0 0.022660 0.186428 0.026281 2 7 0 0.020265 0.016781 1.823477 3 7 0 1.833106 0.010408 -0.369731 4 8 0 -1.285701 0.831051 -0.639285 5 7 0 -0.150385 -0.018996 2.939942 6 7 0 2.881877 0.000621 -0.786233 --------------------------------------------------------------------- Distance matrix (angstroms): 1 2 3 4 5 1 Fe 0.000000 2 N 1.805186 0.000000 3 N 1.861592 2.845451 0.000000 4 O 1.603224 2.904097 3.236213 0.000000 5 N 2.926015 1.129999 3.858631 3.849986 0.000000 6 N 2.978224 3.872940 1.128489 4.252048 4.804100 6 6 N 0.000000 Stoichiometry FeN4O(3) Framework group C1[X(FeN4O)] Deg. of freedom 12 Full point group C1 Largest Abelian subgroup C1 NOp 1 Largest concise Abelian subgroup C1 NOp 1 Standard orientation: --------------------------------------------------------------------- Center Atomic Atomic Coordinates (Angstroms) Number Number Type X Y Z --------------------------------------------------------------------- 1 26 0 -0.032400 0.444952 -0.106911 2 7 0 -1.265571 -0.869714 -0.008731 3 7 0 1.557991 -0.517452 -0.007119 4 8 0 -0.543139 1.936445 0.184502 5 7 0 -2.156470 -1.557903 0.089206 6 7 0 2.605123 -0.920691 0.112882 --------------------------------------------------------------------- ………………………… Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Restarting incremental Fock formation. Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Restarting incremental Fock formation. Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Matrix for removal 16 Erem= -1554.96348757654 Crem= 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Restarting incremental Fock formation. Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 Rare condition: small coef for last iteration: 0.000D+00 >>>>>>>>>> Convergence criterion not met. SCF Done: E(UHF) = -1554.96374932 A.U. after 556 cycles Convg = 0.1593D-03 -V/T = 1.9997 S**2 = 2.9433 Annihilation of the first spin contaminant: S**2 before annihilation 2.9433, after 2.4329 Convergence failure -- run terminated. Error termination via Lnk1e in /export/home/caocao/g03/linda-exe/l502.exel at Sun Dec 12 16:13:40 2010. Job cpu time: 0 days 0 hours 45 minutes 46.6 seconds. File lengths (MBytes): RWF= 31 Int= 0 D2E= 0 Chk= 8 Scr= 1 上面是读取bp86优化的CHK死掉了

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