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贺仪

铁杆木虫 (著名写手)

[交流] 【求助】vasp安装问题已有5人参与

大家好!我在编译vasp时出现如下偶的错误,系统是Ubuntu10.04,IFC,mkl,都是Intel编译套装,openmpi
串行时:
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_barrier'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_critical'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_ok_to_fork'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_end_critical'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_dispatch_init_8'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_global_thread_num'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_serialized_parallel'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_end_ordered'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_fork_call'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_dispatch_next_8'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_for_static_fini'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `omp_get_num_procs'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `omp_get_max_threads'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_ordered'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `omp_get_thread_num'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_for_static_init_4'
/opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.so: undefined reference to `__kmpc_for_static_init_8'
make: *** [vasp] Error 1
并行的时候也出错:
b -ldmy ../vasp.5.lib/linpack_double.o ../vasp.4.lib/lapack_double.o -lmkl_lapack  -Wl,--start-group /opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel.a  /opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel_thread.a  /opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_core.a  -Wl,--end-group  -lguide -lpthread
g77: fftmpi.o: No such file or directory
g77: fftmpi_map.o: No such file or directory
g77: ../vasp.4.lib/lapack_double.o: No such file or directory
g77: /opt/intel/mkl/10.0.4.023/lib/em64t/libmkl_intel.a: No such file or directory
mpif77: No such file or directory
make: *** [vasp] Error 1
Makefile文件下面给出。麻烦大家帮我分析……

[ Last edited by 贺仪 on 2010-8-17 at 18:21 ]
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贺仪

铁杆木虫 (著名写手)

引用回帖:
Originally posted by quantumfang at 2010-08-18 00:58:32:
BLAS=-L/opt/intel/mkl/10.0.4.023/lib/em64t -lmkl -lpthread

缺少太多比如说 -llapack......看mkl手册吧

我加了还是出一样的错……
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9楼2010-08-18 10:07:39
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贺仪

铁杆木虫 (著名写手)

串行的Makefile,只写了关键部分:
FC=ifort
# fortran linker
FCL=$(FC)

CPP     = $(CPP_)  -DHOST=\"LinuxIFC\" \
          -Dkind8 -DCACHE_SIZE=16000 -DPGF90 -Davoidalloc -DNGXhalf \
         -DRPROMU_DGEMV  -DRACCMU_DGEMV \
         -DNOZTRMM
FFLAGS =  -FR -lowercase -assume byterecl
BLAS=-L/opt/intel/mkl/10.0.4.023/lib/em64t -lmkl -lpthread
LAPACK= ../vasp.5.lib/lapack_double.o
LIB  = -L../vasp.5.lib -ldmy \
     ../vasp.5.lib/linpack_double.o $(LAPACK) \
     $(BLAS)
FFT3D   = fft3dfurth.o fft3dlib.o
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2楼2010-08-17 18:15:04
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贺仪

铁杆木虫 (著名写手)

并行部分:
前面的都注释了
FC=mpif77(服务器没有mpif90)
FCL=$(FC)
CPP    = $(CPP_) -DMPI  -DHOST=\"LinuxIFC\" -DIFC \
     -Dkind8 -DCACHE_SIZE=16000 -DPGF90 -Davoidalloc -DNGZhalf \
     -DMPI_BLOCK=8000 \
     -DRPROMU_DGEMV  -DRACCMU_DGEMV \
     -DNOZTRMM -DSCALAPACK(这一段火来加的,加了没影响)
LIB     = -L../vasp.5.lib -ldmy  \
      ../vasp.5.lib/linpack_double.o \ $(LAPACK) \
      $(SCA) $(BLAS)
FFT3D   = fftmpi.o fftmpi_map.o fft3dfurth.o fft3dlib.o
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3楼2010-08-17 18:18:26
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小木虫(金币+0.5):给个红包,谢谢回帖交流
感觉是你的Makefile中blas指定的有问题
应该是缺少一些库没有指定
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4楼2010-08-17 21:45:21
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