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Jacksky

铁杆木虫 (著名写手)

[交流] 【求助】10金币求助Autodock对接问题

本人做完Grid后,开始做dock时出现以下问题,请高手帮忙,谢谢!

DPF> ga_run 10                            # do this many hybrid GA-LS runs

Number of requested LGA dockings = 10 runs


        BEGINNING LAMARCKIAN GENETIC ALGORITHM DOCKING

Run:        1 / 10
Date:        Wed Sep 30 15:09:43 2009
Output level is set to 1.


Creating an initial population of 150 individuals.

Assigning a random translation, a random orientation and 10 random torsions to each of the 150 individuals.

Beginning Lamarckian Genetic Algorithm (LGA), with a maximum of 2500000
energy evaluations.

Generation: 100   Oldest's energy: -9.042    Lowest energy: -9.042    Num.evals.: 117704   Timing: Real= 0.03s,  CPU= 0.03s,  System= 0.00s
Generation: 200   Oldest's energy: -9.048    Lowest energy: -9.048    Num.evals.: 228286   Timing: Real= 0.03s,  CPU= 0.03s,  System= 0.00s
Generation: 300   Oldest's energy: -9.229    Lowest energy: -9.229    Num.evals.: 347286   Timing: Real= 0.03s,  CPU= 0.03s,  System= 0.00s
Generation: 400   Oldest's energy: -9.348    Lowest energy: -9.348    Num.evals.: 461813   Timing: Real= 0.03s,  CPU= 0.03s,  System= 0.00s
Generation: 500   Oldest's energy: -2240384.514    Lowest energy: -2240384.514    Num.evals.: 580399   Timing: Real= 0.02s,  CPU= 0.02s,  System= 0.00s
Generation: 600   Oldest's energy: -3613284.565    Lowest energy: -3613284.565    Num.evals.: 663083   Timing: Real= 0.03s,  CPU= 0.03s,  System= 0.00s
Generation: 700   Oldest's energy: -3650508.687    Lowest energy: -3650508.687    Num.evals.: 737922   Timing: Real= 0.03s,  CPU= 0.03s,  System= 0.00s
Generation: 800   Oldest's energy: -3660401.812    Lowest energy: -3660401.812    Num.evals.: 817565   Timing: Real= 0.02s,  CPU= 0.02s,  System= 0.00s
eval.cc:  ERROR!  energy is infinite!


[ Last edited by lei0736 on 2009-11-24 at 21:23 ]
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yjcmwgk

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密度泛函·小卒

优秀版主

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小木虫(金币+0.5):给个红包,谢谢回帖交流
经私下PM,Jacksky虫友并非故意捣乱,只是误会!纯属误会!特此声明,并删除一些误会的言论,请tjegg谅解

[ Last edited by yjcmwgk on 2009-10-1 at 19:45 ]
7楼2009-10-01 19:43:23
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gwdavid

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yjcmwgk(金币+2,VIP+0): 10-1 11:17
yjcmwgk(金币+10,VIP+0):Jacksky送给你的金币 10-1 11:19
1.首先你这是autodock的问题,请修改你的题目,有歧义的
2.出现这种情况十有八九是对接的受体配体分子的初始构象有问题,重新做一下吧
个人博客:[url]http://blog.sina.com.cn/gaiwei[/url]
2楼2009-09-30 23:07:33
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Jacksky

铁杆木虫 (著名写手)

--deleted--

[ Last edited by yjcmwgk on 2009-10-1 at 19:41 ]
3楼2009-10-01 07:55:20
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tjegg

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★ ★
小木虫(金币+0.5):给个红包,谢谢回帖交流
yjcmwgk(金币+1,VIP+0):经私下PM,Jacksky虫友并非故意捣乱,只是误会!纯属误会!特此声明,并删除一些误会的言论,请tjegg谅解 10-1 19:43
--deleted--

[ Last edited by yjcmwgk on 2009-10-1 at 19:41 ]
除了你的亲人,没有人应该对你好,对你好的人,一定要珍惜。
4楼2009-10-01 09:04:44
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