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Editorial Procedure



The Journal of Molecular Modeling is a high-quality journal with a high rejection rate. Authors are advised to consult the Aims and Scope before submitting a manuscript. Manuscripts that do not meet these criteria may be rejected directly by the Editor-in-Chief. Usually, manuscripts will be assessed by at least two expert referees. The final decision on acceptance and rejection rests with the responsible editor.


English language

In order to reduce the load on our referees, the editors reserve the right not to send manuscripts for refereeing before they are satisfied with the standard of English in the manuscript. Non native-English speakers are strongly encouraged to have their manuscripts corrected by a native speaker before submitting them, so that manuscripts can be judged on their scientific quality alone. See “Does Springer provide English language support?” below.

Manuscript Submission





Manuscript Submission

Submission of a manuscript implies: that the work described has not been published before; that it is not under consideration for publication anywhere else; that its publication has been approved by all co-authors, if any, as well as by the responsible authorities – tacitly or explicitly – at the institute where the work has been carried out. The publisher will not be held legally responsible should there be any claims for compensation.



Permissions

Authors wishing to include figures, tables, or text passages that have already been published elsewhere are required to obtain permission from the copyright owner(s) for both the print and online format and to include evidence that such permission has been granted when submitting their papers. Any material received without such evidence will be assumed to originate from the authors.


Online Submission

Authors should submit their manuscripts online. Electronic submission substantially reduces the editorial processing and reviewing times and shortens overall publication times. Please follow the hyperlink “Submit online” on the right and upload all of your manuscript files following the instructions given on the screen.

Title page





Title Page

The title page should include:
The name(s) of the author(s)
A concise and informative title
The affiliation(s) and address(es) of the author(s)
The e-mail address, telephone and fax numbers of the corresponding author



Abstract

Please provide an abstract of 150 to 250 words. The abstract should not contain any undefined abbreviations or unspecified references.


Keywords

Please provide 4 to 6 keywords which can be used for indexing purposes.

Text





Text Formatting

Manuscripts should be submitted in Word.

Use a normal, plain font (e.g., 10-point Times Roman) for text.
Use italics for emphasis.
Use the automatic page numbering function to number the pages.
Do not use field functions.
Use tab stops or other commands for indents, not the space bar.
Use the table function, not spreadsheets, to make tables.
Use the equation editor or MathType for equations.
Save your file in docx format (Word 2007 or higher) or doc format (older Word versions).



Manuscripts with mathematical content can also be submitted in LaTeX.


LaTeX macro package (zip, 182 kB)




Headings

Please use no more than three levels of displayed headings.


Abbreviations

Abbreviations should be defined at first mention and used consistently thereafter.


Footnotes

Footnotes can be used to give additional information, which may include the citation of a reference included in the reference list. They should not consist solely of a reference citation, and they should never include the bibliographic details of a reference. They should also not contain any figures or tables.
Footnotes to the text are numbered consecutively; those to tables should be indicated by superscript lower-case letters (or asterisks for significance values and other statistical data). Footnotes to the title or the authors of the article are not given reference symbols.
Always use footnotes instead of endnotes.


Acknowledgments

Acknowledgments of people, grants, funds, etc. should be placed in a separate section before the reference list. The names of funding organizations should be written in full.

LaTeX and Online Submission



All source files you upload in the online submission system will be automatically compiled into a single PDF file to be approved by you at the end of the submission process. While the compiled PDF will be used for peer-review purposes, your uploaded source files will be transferred to the publisher for publication upon acceptance.


Please do not use subfolders for your LaTeX submission, e.g. for figures or bibliographic files. Further technical information on uploading and compiling your LaTeX submission can be found under


http://www.editorialmanager.de/pdf/latex/



Specific remarks





The Introduction should state the purpose of the investigation and give a short review of the pertinent literature.
The Methods section should follow the Introduction and should provide enough information to allow the work reported to be repeated.
The Results section should describe the outcome of the study. Data should be presented as concisely as possible, if appropriate in the form of tables or figures, although very large tables should be avoided.
The Discussion should be an interpretation of the results and their significance with reference to work by other authors.
The Summary should be concise and informative without repeating sections of the discussion.
Spectra. Submission of spectra as produced by a computer running a spectrometer or by a data station is encouraged. Routine infrared, electronic, NMR, and mass spectra of new compounds should be numerically summarized, as appropriate, in the Materials and methods section.
Crystallographic data. Manuscripts reporting determinations of molecular structure by Xray crystallography must be accompanied by supplementary material (see below) containing tables of positional and thermal parameters. Tables of bond lengths and angles may be published within the paper. If publication of more complete crystallographic details is planned, this should be stated in a footnote, with the authors’ names and the journal of publication included, if possible.
Chemical formulae and names as well as the names of organisms must be unambiguous and in accordance with the relevant international recommendations, cf. “IUPAC (1993) Quantities, Units and Symbols Trade, Blackwell Scientific, Oxford” and “ISO (1993) International Vocabulary of Basic and General Terms in Metrology”, Geneva. Trade names should be avoided: abbreviations and uncommon symbols should be explained at first mention.
Formulae and symbols. These must be written legibly and will be typeset in italics. They should be written or marked as such in the manuscript unless they require different styling. Please use correct designations for standardized DIN regulations.
Nomenclature. IUPAC rules must be used for designating chemical compounds. In some fields, e.g. pharmacology, generic or INN names may be used. The use of tradenames alone to identify such compounds as medicines or pesticides is not allowed.
Proprietary substances and materials, and instruments. The correct designation and the manufacturer’s name should be given. Where the manufacturer is not well known, the address should also be included.

References



Citation

Reference citations in the text should be identified by numbers in square brackets. Some examples:
1. Negotiation research spans many disciplines [3].
2. This result was later contradicted by Becker and Seligman [5].
3. This effect has been widely studied [1-3, 7].

Reference list

The list of references should only include works that are cited in the text and that have been published or accepted for publication. Personal communications and unpublished works should only be mentioned in the text. Do not use footnotes or endnotes as a substitute for a reference list.

The entries in the list should be numbered consecutively.
Journal article
Gamelin FX, Baquet G, Berthoin S, Thevenet D, Nourry C, Nottin S, Bosquet L (2009) Effect of high intensity intermittent training on heart rate variability in prepubescent children. Eur J Appl Physiol 105:731-738. doi: 10.1007/s00421-008-0955-8
Ideally, the names of all authors should be provided, but the usage of “et al” in long author lists will also be accepted:
Smith J, Jones M Jr, Houghton L et al (1999) Future of health insurance. N Engl J Med 965:325–329
Article by DOI
Slifka MK, Whitton JL (2000) Clinical implications of dysregulated cytokine production. J Mol Med. doi:10.1007/s001090000086
Book
South J, Blass B (2001) The future of modern genomics. Blackwell, London
Book chapter
Brown B, Aaron M (2001) The politics of nature. In: Smith J (ed) The rise of modern genomics, 3rd edn. Wiley, New York, pp 230-257
Online document
Cartwright J (2007) Big stars have weather too. IOP Publishing PhysicsWeb. http://physicsweb.org/articles/news/11/6/16/1. Accessed 26 June 2007
Dissertation
Trent JW (1975) Experimental acute renal failure. Dissertation, University of California


Always use the standard abbreviation of a journal’s name according to the ISSN List of Title Word Abbreviations, see


ISSN.org LTWA




If you are unsure, please use the full journal title.

For authors using EndNote, Springer provides an output style that supports the formatting of in-text citations and reference list.

EndNote style (zip, 2 kB)




Authors preparing their manuscript in LaTeX can use the bibtex file spbasic.bst which is included in Springer’s LaTeX macro package.

Tables



All tables are to be numbered using Arabic numerals.

Tables should always be cited in text in consecutive numerical order.

For each table, please supply a table caption (title) explaining the components of the table.

Identify any previously published material by giving the original source in the form of a reference at the end of the table caption.

Footnotes to tables should be indicated by superscript lower-case letters (or asterisks for significance values and other statistical data) and included beneath the table body.

Artwork and Illustrations Guidelines





Electronic Figure Submission

Supply all figures electronically.
Indicate what graphics program was used to create the artwork.
For vector graphics, the preferred format is EPS; for halftones, please use TIFF format. MSOffice files are also acceptable.
Vector graphics containing fonts must have the fonts embedded in the files.
Name your figure files with "Fig" and the figure number, e.g., Fig1.eps.


Line Art
Line BW
Definition: Black and white graphic with no shading.
Do not use faint lines and/or lettering and check that all lines and lettering within the figures are legible at final size.
All lines should be at least 0.1 mm (0.3 pt) wide.
Scanned line drawings and line drawings in bitmap format should have a minimum resolution of 1200 dpi.
Vector graphics containing fonts must have the fonts embedded in the files.


Halftone Art
Halftone gray color
Definition: Photographs, drawings, or paintings with fine shading, etc.
If any magnification is used in the photographs, indicate this by using scale bars within the figures themselves.
Halftones should have a minimum resolution of 300 dpi.


Combination Art
Combined
Definition: a combination of halftone and line art, e.g., halftones containing line drawing, extensive lettering, color diagrams, etc.
Combination artwork should have a minimum resolution of 600 dpi.



Color Art

Color art is free of charge for online publication.
If black and white will be shown in the print version, make sure that the main information will still be visible. Many colors are not distinguishable from one another when converted to black and white. A simple way to check this is to make a xerographic copy to see if the necessary distinctions between the different colors are still apparent.
If the figures will be printed in black and white, do not refer to color in the captions.
Color illustrations should be submitted as RGB (8 bits per channel).



Figure Lettering

To add lettering, it is best to use Helvetica or Arial (sans serif fonts).
Keep lettering consistently sized throughout your final-sized artwork, usually about 2–3 mm (8–12 pt).
Variance of type size within an illustration should be minimal, e.g., do not use 8-pt type on an axis and 20-pt type for the axis label.
Avoid effects such as shading, outline letters, etc.
Do not include titles or captions within your illustrations.



Figure Numbering

All figures are to be numbered using Arabic numerals.
Figures should always be cited in text in consecutive numerical order.
Figure parts should be denoted by lowercase letters (a, b, c, etc.).
If an appendix appears in your article and it contains one or more figures, continue the consecutive numbering of the main text. Do not number the appendix figures,
"A1, A2, A3, etc." Figures in online appendices (Electronic Supplementary Material) should, however, be numbered separately.


Figure Captions

Each figure should have a concise caption describing accurately what the figure depicts. Include the captions in the text file of the manuscript, not in the figure file.
Figure captions begin with the term Fig. in bold type, followed by the figure number, also in bold type.
No punctuation is to be included after the number, nor is any punctuation to be placed at the end of the caption.
Identify all elements found in the figure in the figure caption; and use boxes, circles, etc., as coordinate points in graphs.
Identify previously published material by giving the original source in the form of a reference citation at the end of the figure caption.


Figure Placement and Size

When preparing your figures, size figures to fit in the column width.
For most journals the figures should be 39 mm, 84 mm, 129 mm, or 174 mm wide and not higher than 234 mm.
For books and book-sized journals, the figures should be 80 mm or 122 mm wide and not higher than 198 mm.


Permissions

If you include figures that have already been published elsewhere, you must obtain permission from the copyright owner(s) for both the print and online format. Please be aware that some publishers do not grant electronic rights for free and that Springer will not be able to refund any costs that may have occurred to receive these permissions. In such cases, material from other sources should be used.


Accessibility

In order to give people of all abilities and disabilities access to the content of your figures, please make sure that

All figures have descriptive captions (blind users could then use a text-to-speech software or a text-to-Braille hardware)
Patterns are used instead of or in addition to colors for conveying information (colorblind users would then be able to distinguish the visual elements)
Any figure lettering has a contrast ratio of at least 4.5:1


Electronic Supplementary Material



Springer accepts electronic multimedia files (animations, movies, audio, etc.) and other supplementary files to be published online along with an article or a book chapter. This feature can add dimension to the author's article, as certain information cannot be printed or is more convenient in electronic form.


Submission

Supply all supplementary material in standard file formats.
Please include in each file the following information: article title, journal name, author names; affiliation and e-mail address of the corresponding author.
To accommodate user downloads, please keep in mind that larger-sized files may require very long download times and that some users may experience other problems during downloading.


Audio, Video, and Animations

Always use MPEG-1 (.mpg) format.


Text and Presentations

Submit your material in PDF format; .doc or .ppt files are not suitable for long-term viability.
A collection of figures may also be combined in a PDF file.


Spreadsheets

Spreadsheets should be converted to PDF if no interaction with the data is intended.
If the readers should be encouraged to make their own calculations, spreadsheets should be submitted as .xls files (MS Excel).



Specialized Formats

Specialized format such as .pdb (chemical), .wrl (VRML), .nb (Mathematica notebook), and .tex can also be supplied.



Collecting Multiple Files

It is possible to collect multiple files in a .zip or .gz file.



Numbering

If supplying any supplementary material, the text must make specific mention of the material as a citation, similar to that of figures and tables.
Refer to the supplementary files as “Online Resource”, e.g., "... as shown in the animation (Online Resource 3)", “... additional data are given in Online Resource 4”.
Name the files consecutively, e.g. “ESM_3.mpg”, “ESM_4.pdf”.


Captions

For each supplementary material, please supply a concise caption describing the content of the file.



Processing of supplementary files

Electronic supplementary material will be published as received from the author without any conversion, editing, or reformatting.


Accessibility

In order to give people of all abilities and disabilities access to the content of your supplementary files, please make sure that
The manuscript contains a descriptive caption for each supplementary material
Video files do not contain anything that flashes more than three times per second (so that users prone to seizures caused by such effects are not put at risk)

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2楼2015-04-15 21:13:45
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引用回帖:
2楼: Originally posted by tongji_fubo at 2015-04-15 21:13:45
Editorial Procedure



The Journal of Molecular Modeling is a high-quality journal with a high rejection rate. Authors are advised to consult the Aims and Scope before submitting a manuscript. Ma ...

非常感谢!
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