²é¿´: 886  |  »Ø¸´: 3

curieshicy

Òø³æ (³õÈëÎÄ̳)

[ÇóÖú] Çë½ÌGULPÖжà¸öϵ×ÛµÄÊäÈ뷽ʽ ÒÑÓÐ1È˲ÎÓë

GULPÖÐ×Ô´øµÄÀý×ÓÖÐÖ»½éÉÜÁËÒ»¸öϵ×ÛµÄÊäÈ뷽ʽ±ÈÈçexample16

#  MD options
#
integrator leapfrog verlet
ensemble nvt 0.05
temperature 300
equil 0.5 ps
produ 0.20 ps
timestep 0.0001 ps
sample 0.01 ps
write 0.01 ps
#

ÎÒÏëÇë½ÌÖîλƽºâʱÓÃNVT ¼ÆËãʱÓÃNVE ÔõôʵÏÖÄØ£¿
»Ø¸´´ËÂ¥

» ²ÂÄãϲ»¶

» ±¾Ö÷ÌâÏà¹Ø¼ÛÖµÌùÍÆ¼ö£¬¶ÔÄúͬÑùÓаïÖú:

ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

oxox6085

ר¼Ò¹ËÎÊ (ÕýʽдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï ¡ï ¡ï
¸Ðл²ÎÓ룬ӦÖúÖ¸Êý +1
ÔÂÖ»À¶: ½ð±Ò+3, ¸Ðлָµ¼£¡ 2014-06-16 19:42:29
ensemble nve
ensemble nvt 0.05
ensemble npt 0.05 0.5
ÓÐЩÊÂÇé¿ÉÄÜÖ»ÓмÆËã»úÄ£ÄâÄܸæËßÎÒÃÇ´ð°¸
2Â¥2014-06-06 06:56:19
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

curieshicy

Òø³æ (³õÈëÎÄ̳)

Ðè²»ÐèÒªÔÚequil 0.5ps ºÍ produ 0.20 psÖ®¼ä¼ÓÈë ensemble nve ÕâÑù³ÌÐòÖªµÀproduction ½×¶ÎÓÃnve

¡°integrator leapfrog verlet
ensemble nvt 0.05
temperature 300
equil 0.5 ps

ENSEMBLE NVE

produ 0.20 ps
timestep 0.0001 ps
sample 0.01 ps
write 0.01 ps
¡±
3Â¥2014-06-06 10:17:13
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû

oxox6085

ר¼Ò¹ËÎÊ (ÕýʽдÊÖ)

¡¾´ð°¸¡¿Ó¦Öú»ØÌû

¡ï
ÔÂÖ»À¶: ½ð±Ò+1, ¹ÄÀø½»Á÷£¡ 2014-06-16 19:42:37
ÒýÓûØÌû:
3Â¥: Originally posted by curieshicy at 2014-06-06 03:17:13
Ðè²»ÐèÒªÔÚequil 0.5ps ºÍ produ 0.20 psÖ®¼ä¼ÓÈë ensemble nve ÕâÑù³ÌÐòÖªµÀproduction ½×¶ÎÓÃnve

¡°integrator leapfrog verlet
ensemble nvt 0.05
temperature 300
equil 0.5 ps

ENSEMBLE NVE

prod ...

you need to understand the difference between ensembles and equilibrium/production procedures, they are independent concepts
ÓÐЩÊÂÇé¿ÉÄÜÖ»ÓмÆËã»úÄ£ÄâÄܸæËßÎÒÃÇ´ð°¸
4Â¥2014-06-07 18:14:28
ÒÑÔÄ   »Ø¸´´ËÂ¥   ¹Ø×¢TA ¸øTA·¢ÏûÏ¢ ËÍTAºì»¨ TAµÄ»ØÌû
Ïà¹Ø°æ¿éÌø×ª ÎÒÒª¶©ÔÄÂ¥Ö÷ curieshicy µÄÖ÷Ìâ¸üÐÂ
×î¾ßÈËÆøÈÈÌûÍÆ¼ö [²é¿´È«²¿] ×÷Õß »Ø/¿´ ×îºó·¢±í
[»ù½ðÉêÇë] ͶƱ:  ÓжàÉÙÈËÊǽñÌì²éϵͳ֪µÀ½á¹ûµÄ£¿ +17 °®¿´ÊéµÄ¿ÉÀÖ 2026-08-26 19/950 2026-08-30 22:24 by xiangy672
[»ù½ðÉêÇë] Ϊʲôµ½ÏÖÔÚûÊÕµ½Í¨Öª£¿ +5 tannykie 2026-08-29 5/250 2026-08-30 21:05 by purplejack
[»ù½ðÉêÇë] ÃæÉÏÒâ¼û³öÀ´ÁË +9 »ÆÄñÓÚ·ÉChao 2026-08-29 18/900 2026-08-30 16:47 by »ÆÄñÓÚ·ÉChao
[»ù½ðÉêÇë] 29ºÅÃ÷Ìì»áÆÀÂð +3 ±¿±¿ÌÆ 2026-08-28 3/150 2026-08-30 09:29 by cww8181
[»ù½ðÉêÇë] ÎÒ¾ÍÊÇÉêÇëÒ»¸öÃæÉÏÏîÄ¿¶øÒÑ£¬ÕâÆÀÉóÒâ¼ûÊǰ´ÕÕ½ÜÇàµÄÌõ¼þÆÀµÄ°É£¿ +6 gouxfjh 2026-08-28 11/550 2026-08-30 07:57 by gouxfjh
[»ù½ðÉêÇë] Ϊʲô×ÊÖúÊý¸÷´ó¸ßУ¶¼´´Ð¸ߣ¬×Ô¼ºÉêÇëÔõô¾ÍÕâôÄÑ +12 Kittylucky 2026-08-27 13/650 2026-08-29 00:04 by superceng
[»ù½ðÉêÇë] ϵͳ²é²»µ½ +11 ¶­°Ëǧ 2026-08-26 11/550 2026-08-28 18:06 by Leogzhya
[»ù½ðÉêÇë] »ù½ð²»ÖУ¬¹²Ãã +11 eulota 2026-08-26 11/550 2026-08-28 14:22 by »ðÐdz¬ÈËxi
[»ù½ðÉêÇë] »ù½ðϵͳʲôÄÚÈÝҲûÓÐ 30+4 winsaint 2026-08-27 9/450 2026-08-28 11:06 by maolC
[»ù½ðÉêÇë] ÃæÉϺÏ×÷µ¥Î»¸ÇÕ +5 ssyjh 2026-08-27 5/250 2026-08-27 20:50 by gdfollow
[»ù½ðÉêÇë] »ù½ðδÖУ¬ÕâÖÖ´ð¸´ÊÇÄ£°åÂ𣿠+5 zhaosm1982 2026-08-27 6/300 2026-08-27 16:00 by lfy8008
[»ù½ðÉêÇë] ¿´°åÉÏÕâô¶àÖеģ¬ÓеãÏñ50ÈËȺÀï49¸öÈ˶¼ÊÇÆ­×ÓµÄÄÇÖָоõ¡­¡­ +5 a089 2026-08-26 6/300 2026-08-27 14:05 by jonewore
[ÎÄѧ·¼²ÝÔ°] ÃÎÏë +3 myrtle 2026-08-26 3/150 2026-08-27 10:01 by angelyueyi
[»ù½ðÉêÇë] ÎÒ²»Àí½â£¡ +15 Edward_pc 2026-08-26 23/1150 2026-08-26 20:34 by zzuzxg
[»ù½ðÉêÇë] ³öÀ´ÁË +9 trojank 2026-08-26 9/450 2026-08-26 14:25 by ±¦±´³æ×Ó
[»ù½ðÉêÇë] ϵͳ½ø²»È¥ +4 yanglien 2026-08-26 5/250 2026-08-26 11:10 by wenfengw83
[»ù½ðÉêÇë] ÏîÄ¿ÐÅÏ¢ºÍ¾­·ÑÐÅÏ¢ÔÚϵͳÀï¶¼¿ÉÒÔ¿´µ½ÁË +6 wittyboy 2026-08-26 14/700 2026-08-26 10:55 by wittyboy
[»ù½ðÉêÇë] ÔÚ¼á±ù»¹¸Ç×ű±º£µÄʱºò£¬ÎÒ¿´µ½ÁËÅ­·ÅµÄ÷»¨¡£ (½ð±Ò+10) +6 ziyangfang 2026-08-25 9/450 2026-08-25 20:26 by huagongfeihu
[»ù½ðÉêÇë] ijЩ»ú¹¹£¬ÒÔЧÂʵÍΪÈÙ£¬ÒÔЧÂʵÍ×÷Ϊ´æÔڸР+9 yuleib84 2026-08-25 10/500 2026-08-25 17:14 by alexon
[»ù½ðÉêÇë] ûÓÐÈκÎÏûÏ¢-ÊDz»ÊǾÍÁ¹ÁË +9 ͼÀ²Í¼À² 2026-08-24 10/500 2026-08-25 11:59 by ÄϺ£Ð¡¸ç
ÐÅÏ¢Ìáʾ
ÇëÌî´¦ÀíÒâ¼û