24小时热门版块排行榜    

查看: 1761  |  回复: 11

mouwat

铁虫 (初入文坛)

[求助] 有關聲子eigen value的計算

我用tnlo_2計算一層平面結構時是OK的  但在改變原子位置使其有點皺摺時就無法計算了  err檔中?K沒有對錯誤的敘述  請問該怎麼辦呢
回复此楼

» 猜你喜欢

» 本主题相关价值贴推荐,对您同样有帮助:

已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
回帖支持 ( 显示支持度最高的前 50 名 )

souledge

专家顾问 (著名写手)

★ ★
franch: 金币+2, 专家考核, 谢谢回帖交流 2012-09-24 12:57:28
看楼主的语言习惯是港台的,我还是用英语回复好了。
The error info can be found at the end of xxx.log file if you ran Abinit with command: abinit < xxx.files >& xxx.log, otherwise, it displays in your terminal.
I am not sure which kind of "error" you met, or what means "cannot calculate". By guessing, displacements of ion(s) broke the symmetry, thus the convergence of response function may become more difficult.
思想重于技巧,内涵重于表象
2楼2012-09-23 00:16:06
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

souledge

专家顾问 (著名写手)

???????:
3?: Originally posted by mouwat at 2012-09-23 00:42:40
???w??????  ?x?x????N??

sorry?????o?????Y??

err files:
mpiexec: Warning: tasks 2,4-15 exited with status 1.

tnlo_2????????岽??r???????????

input files??????
xred         ...

Actually, the error info you provided was not really the proper one, since it was just a stop signal from MPI code, instead of that from Abinit.
Why don't you attach your full log or output file here? You can edit your first post and upload the file as accessory.
Further, you may download my tutorial about Abinit from the ??????? broad. That will give you some idea for finding error info from Abinit.
?????????δ???????????????????????MPI??????????????????Abinit???
??????log???????????????????????Σ?????????????????????????
????????????????????????????Abinit??????????????β???Abinit??????????
思想重于技巧,内涵重于表象
4楼2012-09-23 10:11:45
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

souledge

专家顾问 (著名写手)

mouwat: 回帖置顶 2012-09-25 06:59:03
引用回帖:
5楼: Originally posted by mouwat at 2012-09-23 11:04:38
附上log檔
http://www.putlocker.com/file/507AF85E4CF0552D

感謝...

I have checked it, the error info was as:
引用回帖:
p15_14241:  p4_error: interrupt SIGSEGV: 11
rm_l_15_14245: (13.175781) net_send: could not write to fd=5, errno = 32
p1_10669:  p4_error: net_recv read:  probable EOF on socket: 1
p2_10670:  p4_error: net_recv read:  probable EOF on socket: 1
p4_25239:  p4_error: net_recv read:  probable EOF on socket: 1
p6_25241:  p4_error: net_recv read:  probable EOF on socket: 1
p5_25240:  p4_error: net_recv read:  probable EOF on socket: 1
p7_25242:  p4_error: net_recv read:  probable EOF on socket: 1

Therefore, I wanna ask a question, which version of MPI you are using now, MPICH1? Since I can just find p4_error from MPICH1 or P4 but not from modern MPICH2 and OpenMPI. Would you like to take a look at your mpi version by : mpiexec -info ?
Of course, some person reported that p4_error may be caused by network problem among nodes, I am not sure whether you are using cluster or workstation (16 cores Xeon platform could be multi-CPU workstation). But if you were using the later one, it does not make sense to discuss about network problem.
思想重于技巧,内涵重于表象
6楼2012-09-23 13:19:33
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

souledge

专家顾问 (著名写手)

★ ★
franch: 金币+2, 谢谢回帖交流 2012-09-25 10:02:27
franch: 专家考核 2012-09-25 10:02:35
???????:
7?: Originally posted by mouwat at 2012-09-23 14:22:34
???????殅?I??????^?????а???r????????\??  ?????????????????
???????f?W·???????f?^abinit???@???????????????}
?????o???B?j????  ?????@?Y?????????P????o???鵽???P
????????????? ...

It could be an Abinit problem, even though I still think it is higher possible raised from the old version of MPI.
If you wanna calculate the 3rd-order deviation of energy ( anharmonic phonon), why not giving a try to Quantum-ESPRESSO? It is normally stable for response function issues.
思想重于技巧,内涵重于表象
8楼2012-09-23 22:25:19
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

oxox6085

专家顾问 (正式写手)

【答案】应助回帖

★ ★
感谢参与,应助指数 +1
franch: 金币+2, 谢谢回帖交流 2012-09-24 12:59:43
我有一个想法:
本身能量的三阶导即要求之前结构优化要严格的收敛,随意改动原子的位置后,原来收敛的体系现在必然就不收敛了。建议楼主尝试重新优化具有褶皱的体系,可以利用一些优化技巧,如:只充分优化晶胞不改变原子相对位置从而达到收敛,或者锁定原子z方向的坐标,等等。
有些事情可能只有计算机模拟能告诉我们答案
9楼2012-09-24 00:03:38
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
普通回帖

mouwat

铁虫 (初入文坛)

???????:
2?: Originally posted by souledge at 2012-09-23 00:16:06
??????????????????????????????????????
The error info can be found at the end of xxx.log file if you ran Abinit with command: abinit < xxx.files >& xxx.log, otherwise, it display ...

???w??????  ?x?x????N??

sorry?????o?????Y??

err files:
mpiexec: Warning: tasks 2,4-15 exited with status 1.

tnlo_2????????岽??r???????????

input files??????
xred        0.33333 0.66667  0.5
               0.66667 0.33333  0.5
to
xred        0.33333 0.66667  0.5026208779
               0.66667 0.33333  0.4973791221
3楼2012-09-23 00:42:40
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

mouwat

铁虫 (初入文坛)

引用回帖:
4楼: Originally posted by souledge at 2012-09-23 10:11:45
Actually, the error info you provided was not really the proper one, since it was just a stop signal from MPI code, instead of that from Abinit.
Why don't you attach your full log or output file he ...

附上log檔
http://www.putlocker.com/file/507AF85E4CF0552D

感謝
5楼2012-09-23 11:04:38
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

mouwat

铁虫 (初入文坛)

???????:
6?: Originally posted by souledge at 2012-09-23 13:19:33
I have checked it, the error info was as:

Therefore, I wanna ask a question, which version of MPI you are using now, MPICH1? Since I can just find p4_error from MPICH1 or P4 but not from modern M ...

???????殅?I??????^?????а???r????????\??  ?????????????????
???????f?W·???????f?^abinit???@???????????????}
?????o???B?j????  ?????@?Y?????????P????o???鵽???P
?????????????  ???????????????????岽????????????????岽??????  ????s???????岽??r??o?????....
7楼2012-09-23 14:22:34
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

mouwat

铁虫 (初入文坛)

???????:
6?: Originally posted by souledge at 2012-09-23 13:19:33
I have checked it, the error info was as:

Therefore, I wanna ask a question, which version of MPI you are using now, MPICH1? Since I can just find p4_error from MPICH1 or P4 but not from modern M ...

?x?x????V??some person reported that p4_error may be caused by network problem among nodes?@??,???????????????CPU????]????????}??
10楼2012-09-25 06:54:55
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
相关版块跳转 我要订阅楼主 mouwat 的主题更新
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[考研] 材料专硕英一数二306 +5 z1z2z3879 2026-03-18 5/250 2026-03-19 07:43 by BruceLiu320
[考研] 0703化学调剂 +8 妮妮ninicgb 2026-03-15 12/600 2026-03-19 05:55 by anny19840123
[考研] 0703化学 305求调剂 +4 FY_yy 2026-03-14 4/200 2026-03-19 05:54 by anny19840123
[考研] 【同济软件】软件(085405)考研求调剂 +3 2026eternal 2026-03-18 3/150 2026-03-18 19:09 by 搏击518
[考研] 一志愿中国海洋大学,生物学,301分,求调剂 +4 1孙悟空 2026-03-17 4/200 2026-03-18 17:59 by fivewind
[考研] 26调剂/材料/英一数二/总分289/已过A区线 +7 步川酷紫123 2026-03-13 7/350 2026-03-18 17:12 by 尽舜尧1
[考研] 288求调剂,一志愿华南理工大学071005 +4 ioodiiij 2026-03-17 4/200 2026-03-18 12:36 by Linda Hu
[考研] 301求调剂 +9 yy要上岸呀 2026-03-17 9/450 2026-03-18 08:58 by 无际的草原
[硕博家园] 湖北工业大学 生命科学与健康学院-课题组招收2026级食品/生物方向硕士 +3 1喜春8 2026-03-17 5/250 2026-03-17 17:18 by ber川cool子
[考研] 有没有道铁/土木的想调剂南林,给自己招师弟中~ +3 TqlXswl 2026-03-16 7/350 2026-03-17 15:23 by TqlXswl
[考研] 一志愿苏州大学材料工程(085601)专硕有科研经历三项国奖两个实用型专利一项省级立项 +6 大火山小火山 2026-03-16 8/400 2026-03-17 15:05 by 无懈可击111
[考博] 26申博 +4 八旬速览 2026-03-16 4/200 2026-03-17 13:00 by 轻松不少随
[考研] 一志愿,福州大学材料专硕339分求调剂 +3 木子momo青争 2026-03-15 3/150 2026-03-17 07:52 by laoshidan
[考研] 0854控制工程 359求调剂 可跨专业 +3 626776879 2026-03-14 9/450 2026-03-16 17:42 by 626776879
[基金申请] 今年的国基金是打分制吗? 50+3 zhanghaozhu 2026-03-14 3/150 2026-03-16 17:07 by 北京莱茵润色
[考研] 一志愿211 0703方向310分求调剂 +3 努力奋斗112 2026-03-15 3/150 2026-03-16 16:44 by houyaoxu
[考研] 26考研一志愿中国石油大学(华东)305分求调剂 +3 嘉年新程 2026-03-15 3/150 2026-03-15 13:58 by 哈哈哈哈嘿嘿嘿
[硕博家园] 085600 260分求调剂 +3 天空还下雨么 2026-03-13 5/250 2026-03-13 18:46 by 天空还下雨么
[考研] 材料专硕350 求调剂 +4 王金科 2026-03-12 4/200 2026-03-13 16:02 by ruiyingmiao
[考研] 工科278分求调剂 +5 周慢热啊 2026-03-12 7/350 2026-03-13 15:49 by JourneyLucky
信息提示
请填处理意见