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brilliant

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[交流] 【交流】Aromatic-Aromatic Interaction Database 文献

Aromatic-Aromatic Interaction Database

References:
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17. Sivakova S, Rowan SJ. Nucleobases as supramolecular motifs. Chem. Soc. Rev., 2005; 34:9-21.

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19. Watanabe T, Ariga Y, Sato U, Toratani T, Hashimoto M, Nikaidou N, Kezuka Y, Nonaka T, Sugiyama J. Aromatic residues within the substrate-binding cleft of Bacillus circulans chitinase A1 are essential for hydrolysis of crystalline chitin. Biochem. J., 2003; 376:237-244.

20. Cotte N, lle Balestre M-N, Aumelas A, MaheA E, Phalipou S, Morin D, Hibert M, Manning M, Durroux T, Barberis C, Mouillac B. Conserved aromatic residues in the transmembrane region VI of the V1a vasopressin receptor differentiate agonist vs. antagonist ligand binding. Eur. J. Biochem., 2000; 267:4253-4263.

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23. Dong G, Chakshusmathi G, Wolin SL, Reinisch KM. Structure of the La motif: a winged helix domain mediates RNA binding via a conserved aromatic patch. EMBO J., 2004; 23:1000-1007.

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25. Brooks DJ, Fresco JR. Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor. Mol. Cell. Prot., 2002; 1:125-131.

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27. Janiak C. A critical account on p-p stacking in metal complexes with aromatic nitrogen-containing ligands. J. Chem. Soc., Dalton Trans., 2000; 3885-3896.

28. Sinnokrot MO, Sherrill CD. Substituent effects in p-p interactions: Sandwich and T-shaped configurations. J. Am. Chem. Soc., 2004; 126:7690-7697.

29. Tatko CD, Waters ML. Comparison of C-H...p and Hydrophobic Interactions in a beta-Hairpin Peptide: Impact on Stability and Specificity. J. Am. Chem. Soc., 2004; 126:2028-2034.

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33. Lee EC, Kim D, Jurecka P, Tarakeshwar P, Hobza P, Kim KS. Understanding of Assembly Phenomenon by Aromatic-Aromatic Interactions: Benzene Dimer and the Substituted Systems. J. Phys. Chem. A, 2007; 111:3446-3457.

34. Takeuchi H. Novel Method for Geometry Optimization of Molecular Clusters: Application to Benzene Clusters. Chem. Inf. Model., 2007; 47:104-109.

35. Sinnokrot MO, Sherrill CD. High-accuracy quantum mechanical studies of p-p interactions in benzene dimers. J. Phys. Chem. A, 2006; 110:10656-68.

36. Tauer TP, Sherrill CD. Beyond the Benzene Dimer: An Investigation of the Additivity of p-p Interactions. J. Phys. Chem. A, 2005; 109:10475-10478.

37. Gonzalez C, Lim EC. Ab Initio Study of the Intermolecular Interactions in Small Benzene Clusters: The Equillibrium Structures of Trimer, Tetramer, and Pentamer. J. Phys. Chem. A, 2001; 105:1904-1908.

38. Andreeva A, Howorth D, Brenner SE, Hubbard TJP, Chothia C, Murzin AG. SCOP database in 2004: refinements integrate structure and sequence family data. Nuc. Acids Res., 2004; 32

226-D229.

39. aAlison L. Cuff; Ian Sillitoe; Tony Lewis; Oliver C. Redfern; Richard Garratt; Janet Thornton; Christine A. Orengo The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Research 2008; 1-5. bOrengo CA, Michie AD, Jones DT, Swindells MB, Thornton JM. CATH: A Hierarchic Classification of Protein Domain Structures. Structure, 1997; 5:1093-1108.

40. Enzyme Nomenclature 1992 [Academic Press, San Diego, California, ISBN 0-12-227164-5 (hardback), 0-12-227165-3 (paperback)] with Supplement 1 (1993), Supplement 2 (1994), Supplement 3 (1995), Supplement 4 (1997) and Supplement 5 (in Eur. J. Biochem., 1994; 223:1-5; Eur. J. Biochem., 1995; 232:1-6; Eur. J. Biochem., 1996: 237:1-5; Eur. J. Biochem., 1997; 250:1-6, and Eur. J. Biochem., 1999; 264:

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