24小时热门版块排行榜    

查看: 355  |  回复: 2

nufang19a

金虫 (正式写手)


[交流] 【求助】加水盒子后,在出去中间部分水时出现了问题(已解决) 已有1人参与

加水盒子的过程:
set sel [atomselect top all]
measure minmax $sel

solvate -t 3 -minmax {上一步的得到的值} -o solkcsa

然后source make_solv.tcl:
set sol_infile solaqp1.pdb
set aqp1_inbase aqp1
set outbase aqp1_solv_raw
package require psfgen
resetpsf
readpsf solaqp1.psf
coordpdb solaqp1.pdb
readpsf ${aqp1_inbase}.psf
coordpdb ${aqp1_inbase}.pdb
writepdb ${outbase}.pdb
writepsf ${outbase}.psf
exit

按照教程再往后:
mol load psf aqp1_solv_raw.psf pdb aqp1_solv.raw.pdb
set all [atomselect top all]
$all moveby [vecinvert [measure center $all]]
display resetview
set solv [atomselect top "segname SOLV"]
$solv set beta 1
set seltext "segname SOLV and same residue as ((z<-20) or (z>10))"
set sel [atomselect top $seltext]
出现了下面的问题:


[ Last edited by nufang19a on 2011-2-21 at 12:29 ]
回复此楼

» 猜你喜欢

» 本主题相关价值贴推荐,对您同样有帮助:

已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)



这是什么原因呢??是因为我在make_solv.tcl脚本里删除了
segment SOLV {
auto none
first NONE
last NONE
pdb $sol_infile
}
coordpdb $sol_infile SOLV
这一段吗??
还有就是我发现别人发表的文章中只是在蛋白的“两端”,加了一些水。那么z<-20 z>10还合适吗??
2楼2011-02-21 10:59:15
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

nufang19a

金虫 (正式写手)



已解决,谢谢各位的关注
3楼2011-02-21 11:49:50
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
相关版块跳转 我要订阅楼主 nufang19a 的主题更新
普通表情 龙 兔 虎 猫 高级回复 (可上传附件)
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[考博] 售SCI文章,我:8O5.5.1.O.54,科目齐全,可+急 +3 uKOSCocCb6Fm 2026-11-12 7/350 2026-11-15 03:32 by xSrQNSSjcgoX
[论文投稿] 售一区SCI文章T0P,我:8O.551.O54,科目全,可十急 +4 uKOSCocCb6Fm 2026-11-12 10/500 2026-11-15 02:15 by xSrQNSSjcgoX
[硕博家园] 售SCI文章,我:8O5.5.1.O.54,科目齐全,可+急 +4 G2rhSvqvhNzl 2026-11-10 6/300 2026-11-15 00:27 by Equinoxhua
[考博] 售SCI一区文章,我:8.O.55.1.O.54,科目齐全,可伽急 +4 G2rhSvqvhNzl 2026-11-10 6/300 2026-11-15 00:24 by Equinoxhua
[考研] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +6 FChKX8meu1ds 2026-11-09 9/450 2026-11-14 22:39 by Equinoxhua
[考博] 售SCI一区文章,我:8.O.551.O.5.4,科目全,可伽急 +3 TZqyNTBa07NP 2026-11-13 3/150 2026-11-14 15:58 by KXypaGgBBlw7
[考博] 27博士申请(市政/环境) +3 ladf 2026-11-12 3/150 2026-11-13 08:19 by Equinoxhua
[考研] 售SCI一区T0P文章,我:8.O.55.1.O.5.4,科目全,可+急 +4 Z7qfCsdIiD1T 2026-11-11 5/250 2026-11-12 11:44 by HajghKOMynmz
[基金申请] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +4 Z7qfCsdIiD1T 2026-11-10 7/350 2026-11-12 11:33 by HajghKOMynmz
[硕博家园] 售SCI一区T0P文章,我:8O.55.1.O.5.4,科目齐全,可+急 +4 Z7qfCsdIiD1T 2026-11-10 6/300 2026-11-12 11:22 by HajghKOMynmz
[考博] 售SCI一区T0P文章,我:8O.55.1.O.5.4,科目齐全,可+急 +4 czAiolzR0IJC 2026-11-10 7/350 2026-11-12 11:11 by HajghKOMynmz
[公派出国] 售SCI一区文章,我:8.O.551.O.5.4,科目全,可伽急 +3 czAiolzR0IJC 2026-11-10 8/400 2026-11-12 11:11 by HajghKOMynmz
[考博] 售SCI一区T0P文章,我:8.O.55.1.O.54,科目齐全,可+急 +3 G2rhSvqvhNzl 2026-11-10 5/250 2026-11-12 10:49 by HajghKOMynmz
[硕博家园] 售SCI文章,我:8O.5.5.1O.54,科目全,可十急 +4 czAiolzR0IJC 2026-11-10 8/400 2026-11-12 10:49 by HajghKOMynmz
[考研] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +4 G2rhSvqvhNzl 2026-11-10 6/300 2026-11-12 10:36 by HajghKOMynmz
[硕博家园] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +8 cqv1zKnzd7hr 2026-11-09 12/600 2026-11-12 09:32 by HajghKOMynmz
[公派出国] 售SCI一区T0P文章,我:8O.55.1.O.5.4,科目齐全,可+急 +3 czAiolzR0IJC 2026-11-10 5/250 2026-11-12 06:36 by 9fOTqj074tIg
[考博] 售SCI一区T0P文章,我:8.O.55.1.O.54,科目齐全,可+急 +3 FChKX8meu1ds 2026-11-09 8/400 2026-11-12 05:30 by 9fOTqj074tIg
[考研] 售SCI一区T0P文章,我:8O.55.1.O.5.4,科目齐全,可+急 +5 cqv1zKnzd7hr 2026-11-09 8/400 2026-11-12 05:08 by 9fOTqj074tIg
[公派出国] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +5 zSbvVX9JFl9J 2026-11-09 8/400 2026-11-12 04:57 by 9fOTqj074tIg
信息提示
请填处理意见