应《网络安全法》要求，自2017年10月1日起，未进行实名认证将不得使用互联网跟帖服务。为保障您的帐号能够正常使用，请尽快对帐号进行手机号验证，感谢您的理解与支持！

24小时热门版块排行榜    

小木虫论坛-学术科研互动平台 » 计算模拟区 » 第一性原理 » Vasp&MedeA » 【求助成功】VASP运行错误
北京石油化工学院2026年研究生招生接收调剂公告
71/1返回列表
查看: 1585  |  回复: 6
只看楼主 @他人 存档 新回复提醒 (忽略) 收藏    在APP中查看

gleerat

木虫 (正式写手)

[交流] 【求助成功】VASP运行错误 已有3人参与

今天集群上的VASP出问题了，请大家看看是什么问题。谢谢了
引用回帖:
running on    4 nodes
distr:  one band on    1 nodes,    4 groups
vasp.4.6.28 25Jul05 complex
POSCAR found :  0 types and    0 ions
[node5:25238] *** Process received signal ***
[node5:25238] Signal: Segmentation fault (11)
[node5:25238] Signal code: Address not mapped (1)
[node5:25238] Failing at address: 0x100
[node5:25238] [ 0] /lib64/tls/libpthread.so.0 [0x30bc30c430]
[node5:25238] [ 1] /home/bin/vasp.openmpi(cvt_text_to_ieee_t+0x44) [0x6b8e7c]
[node5:25238] [ 2] /home/bin/vasp.openmpi(for__cvt_value+0xa4c) [0x6b53a2]
[node5:25238] [ 3] /home/bin/vasp.openmpi(for_read_int_lis_xmit+0x6c6) [0x6928dc]
[node5:25238] [ 4] /home/bin/vasp.openmpi(rdatab_+0x143c) [0x6734b0]
[node5:25238] [ 5] /home/bin/vasp.openmpi(reader_+0x4f93) [0x5d364b]
[node5:25238] [ 6] /home/bin/vasp.openmpi(MAIN__+0x27c6) [0x416306]
[node5:25238] [ 7] /home/bin/vasp.openmpi(main+0x32) [0x413b2a]
[node5:25238] [ 8] /lib64/tls/libc.so.6(__libc_start_main+0xdb) [0x30bb81c3fb]
[node5:25238] [ 9] /home/bin/vasp.openmpi [0x413a6a]
[node5:25238] *** End of error message ***
[node5:25240] *** Process received signal ***
[node5:25240] Signal: Segmentation fault (11)
[node5:25240] Signal code: Address not mapped (1)
[node5:25240] Failing at address: 0x100
[node5:25240] [ 0] /lib64/tls/libpthread.so.0 [0x30bc30c430]
[node5:25240] [ 1] /home/bin/vasp.openmpi(cvt_text_to_ieee_t+0x44) [0x6b8e7c]
[node5:25240] [ 2] /home/bin/vasp.openmpi(for__cvt_value+0xa4c) [0x6b53a2]
[node5:25240] [ 3] /home/bin/vasp.openmpi(for_read_int_lis_xmit+0x6c6) [0x6928dc]
[node5:25240] [ 4] /home/bin/vasp.openmpi(rdatab_+0x143c) [0x6734b0]
[node5:25240] [ 5] /home/bin/vasp.openmpi(reader_+0x4f93) [0x5d364b]
[node5:25240] [ 6] /home/bin/vasp.openmpi(MAIN__+0x27c6) [0x416306]
[node5:25240] [ 7] /home/bin/vasp.openmpi(main+0x32) [0x413b2a]
[node5:25240] [ 8] /lib64/tls/libc.so.6(__libc_start_main+0xdb) [0x30bb81c3fb]
[node5:25240] [ 9] /home/bin/vasp.openmpi [0x413a6a]
[node5:25240] *** End of error message ***
[node5:25239] *** Process received signal ***
[node5:25239] Signal: Segmentation fault (11)
[node5:25239] Signal code: Address not mapped (1)
[node5:25239] Failing at address: 0x100
[node5:25239] [ 0] /lib64/tls/libpthread.so.0 [0x30bc30c430]
[node5:25239] [ 1] /home/bin/vasp.openmpi(cvt_text_to_ieee_t+0x44) [0x6b8e7c]
[node5:25239] [ 2] /home/bin/vasp.openmpi(for__cvt_value+0xa4c) [0x6b53a2]
[node5:25239] [ 3] /home/bin/vasp.openmpi(for_read_int_lis_xmit+0x6c6) [0x6928dc]
[node5:25239] [ 4] /home/bin/vasp.openmpi(rdatab_+0x143c) [0x6734b0]
[node5:25239] [ 5] /home/bin/vasp.openmpi(reader_+0x4f93) [0x5d364b]
[node5:25239] [ 6] /home/bin/vasp.openmpi(MAIN__+0x27c6) [0x416306]
[node5:25239] [ 7] /home/bin/vasp.openmpi(main+0x32) [0x413b2a]
[node5:25239] [ 8] /lib64/tls/libc.so.6(__libc_start_main+0xdb) [0x30bb81c3fb]
[node5:25239] [ 9] /home/bin/vasp.openmpi [0x413a6a]
[node5:25239] *** End of error message ***
[node5:25237] *** Process received signal ***
[node5:25237] Signal: Segmentation fault (11)
[node5:25237] Signal code: Address not mapped (1)
[node5:25237] Failing at address: 0x100
[node5:25237] [ 0] /lib64/tls/libpthread.so.0 [0x30bc30c430]
[node5:25237] [ 1] /home/bin/vasp.openmpi(cvt_text_to_ieee_t+0x44) [0x6b8e7c]
[node5:25237] [ 2] /home/bin/vasp.openmpi(for__cvt_value+0xa4c) [0x6b53a2]
[node5:25237] [ 3] /home/bin/vasp.openmpi(for_read_int_lis_xmit+0x6c6) [0x6928dc]
[node5:25237] [ 4] /home/bin/vasp.openmpi(rdatab_+0x143c) [0x6734b0]
[node5:25237] [ 5] /home/bin/vasp.openmpi(reader_+0x4f93) [0x5d364b]
[node5:25237] [ 6] /home/bin/vasp.openmpi(MAIN__+0x27c6) [0x416306]
[node5:25237] [ 7] /home/bin/vasp.openmpi(main+0x32) [0x413b2a]
[node5:25237] [ 8] /lib64/tls/libc.so.6(__libc_start_main+0xdb) [0x30bb81c3fb]
[node5:25237] [ 9] /home/bin/vasp.openmpi [0x413a6a]
[node5:25237] *** End of error message ***
mpirun noticed that job rank 0 with PID 25237 on node node5 exited on signal 11 (Segmentation fault).
3 additional processes aborted (not shown)

后来我发现，vasp本身没问题，是我使用的一个脚本，之前这个脚本一直正常的，现在脚本出问题了。命令放在脚本中就会出错。
引用回帖:
#!/bin/sh
rm WAVECAR
for i in 0.95 0.96 0.97 0.98 0.99 1.00
do
cat > POSCAR < System = CaFe2As2 afm-opt               
  0.96999999999999997     
    $i    0.0000000000000000    0.0000000000000000
     0.0000000000000000    5.4501999999999997    0.0000000000000000
     0.0000000000000000    0.0000000000000000    5.5061999999999998
   4   8   8
Direct
  0.0000000000000000 -0.0000000000000000 -0.0000000000000000
  0.0000000000000000  0.5000000000000000  0.5000000000000000
  0.5000000000000000 -0.0000000000000000  0.5000000000000000
  0.5000000000000000  0.5000000000000000 -0.0000000000000000
  0.2500000000000000  0.2500000000000000  0.2500000000000000
  0.7500000000000000  0.7500000000000000  0.2500000000000000
  0.7500000000000000  0.2500000000000000  0.7500000000000000
  0.2500000000000000  0.7500000000000000  0.7500000000000000
  0.7500000000000000  0.7500000000000000  0.7500000000000000
  0.7500000000000000  0.2500000000000000  0.2500000000000000
  0.2500000000000000  0.7500000000000000  0.2500000000000000
  0.2500000000000000  0.2500000000000000  0.7500000000000000
  0.3608571367508424  0.0000000000000000  0.0000000000000000
  0.3608571367508424  0.5000000000000000  0.5000000000000000
  0.8608571367508423 -0.0000000000000000  0.5000000000000000
  0.8608571367508423  0.5000000000000000  0.0000000000000000
  0.6391428632491577 -0.0000000000000000  0.0000000000000000
  0.6391428632491577  0.5000000000000000  0.5000000000000000
  0.1391428632491576  0.0000000000000000  0.5000000000000000
  0.1391428632491576  0.5000000000000000  0.0000000000000000
!
cp INCAR.relax INCAR ; cp KPOINTS.relax KPOINTS
echo "c= $i Full Relaxtion"
/home/software/openmpi-1.2.2-intel9/bin/mpirun -np 4 /home/bin/vasp.openmpi
cp OUTCAR OUTCAR.relax ; cp OSZICAR OSZICAR.relax
cp CONTCAR POSCAR ; cp INCAR.static INCAR ; cp KPOINTS.static KPOINTS
echo "c= $i Static Selfconsistent"
/home/software/openmpi-1.2.2-intel9/bin/mpirun -np 4 /home/bin/vasp.openmpi
cp OSZICAR OSZICAR.static ; cp OUTCAR OUTCAR.static
cp INCAR.nsc INCAR ; cp KPOINTS.nsc KPOINTS
echo "c= $i Non-Selfconsistent"
/home/software/openmpi-1.2.2-intel9/bin/mpirun -np 4 /home/bin/vasp.openmpi
cp OUTCAR "c=$i_OUTCAR"
E=`grep "TOTEN" OUTCAR | tail -1 | awk '{printf "%12.6f \n", $5 }'`
V=`grep "volume" OUTCAR | tail -1 | awk '{printf "%12.4f \n", $5 }'`
echo $i $V $E >>EtVo.dat
echo $i $E >>murn.in
done

[ Last edited by gleerat on 2010-11-13 at 13:07 ]
回复此楼

» 猜你喜欢

» 本主题相关价值贴推荐，对您同样有帮助:
明察、慎思、笃行
1楼 2010-10-03 16:49:47
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

bingmou

金虫 (著名写手)
★ ★
小木虫(金币+0.5):给个红包，谢谢回帖交流
cenwanglai(金币+1):呵呵，有啥办法呢？ 2010-10-07 11:19:42
段错误，明显是程序编译有错或者硬件有错
赞一下(2人) 回复此楼
2楼2010-10-03 17:08:20
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

sunyang1988

至尊木虫 (著名写手)
★ ★ ★
小木虫(金币+0.5):给个红包，谢谢回帖交流
bingmou(金币+2):应该是这个问题才对，谢谢交流 2010-10-03 22:05:03
POSCAR found :  0 types and    0 ions
POSCAR设置有问题吧
赞一下(2人) 回复此楼
心之所向无惧无悔
3楼2010-10-03 19:25:01
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

gleerat

木虫 (正式写手)
★
zxzj05(金币+1):谢谢交流！ 2010-10-05 17:18:49
引用回帖:
Originally posted by bingmou at 2010-10-03 17:08:20:
段错误，明显是程序编译有错或者硬件有错

后来我才知道，软件没问题，直接用命令行执行vasp没问题，放在脚本中运行就出问题了。
奇怪的是这个脚本我用了很长时间了，一直没有出问题。这是我的脚本：
引用回帖:
#!/bin/sh
rm WAVECAR
for i in 0.95 0.96 0.97 0.98 0.99 1.00
do
cat > POSCAR < System = CaFe2As2 afm-opt               
  0.96999999999999997     
    $i    0.0000000000000000    0.0000000000000000
     0.0000000000000000    5.4501999999999997    0.0000000000000000
     0.0000000000000000    0.0000000000000000    5.5061999999999998
   4   8   8
Direct
  0.0000000000000000 -0.0000000000000000 -0.0000000000000000
  0.0000000000000000  0.5000000000000000  0.5000000000000000
  0.5000000000000000 -0.0000000000000000  0.5000000000000000
  0.5000000000000000  0.5000000000000000 -0.0000000000000000
  0.2500000000000000  0.2500000000000000  0.2500000000000000
  0.7500000000000000  0.7500000000000000  0.2500000000000000
  0.7500000000000000  0.2500000000000000  0.7500000000000000
  0.2500000000000000  0.7500000000000000  0.7500000000000000
  0.7500000000000000  0.7500000000000000  0.7500000000000000
  0.7500000000000000  0.2500000000000000  0.2500000000000000
  0.2500000000000000  0.7500000000000000  0.2500000000000000
  0.2500000000000000  0.2500000000000000  0.7500000000000000
  0.3608571367508424  0.0000000000000000  0.0000000000000000
  0.3608571367508424  0.5000000000000000  0.5000000000000000
  0.8608571367508423 -0.0000000000000000  0.5000000000000000
  0.8608571367508423  0.5000000000000000  0.0000000000000000
  0.6391428632491577 -0.0000000000000000  0.0000000000000000
  0.6391428632491577  0.5000000000000000  0.5000000000000000
  0.1391428632491576  0.0000000000000000  0.5000000000000000
  0.1391428632491576  0.5000000000000000  0.0000000000000000
!
cp INCAR.relax INCAR ; cp KPOINTS.relax KPOINTS
echo "c= $i Full Relaxtion"
/home/software/openmpi-1.2.2-intel9/bin/mpirun -np 4 /home/bin/vasp.openmpi
cp OUTCAR OUTCAR.relax ; cp OSZICAR OSZICAR.relax
cp CONTCAR POSCAR ; cp INCAR.static INCAR ; cp KPOINTS.static KPOINTS
echo "c= $i Static Selfconsistent"
/home/software/openmpi-1.2.2-intel9/bin/mpirun -np 4 /home/bin/vasp.openmpi
cp OSZICAR OSZICAR.static ; cp OUTCAR OUTCAR.static
cp INCAR.nsc INCAR ; cp KPOINTS.nsc KPOINTS
echo "c= $i Non-Selfconsistent"
/home/software/openmpi-1.2.2-intel9/bin/mpirun -np 4 /home/bin/vasp.openmpi
cp OUTCAR "c=$i_OUTCAR"
E=`grep "TOTEN" OUTCAR | tail -1 | awk '{printf "%12.6f \n", $5 }'`
V=`grep "volume" OUTCAR | tail -1 | awk '{printf "%12.4f \n", $5 }'`
echo $i $V $E >>EtVo.dat
echo $i $E >>murn.in
done
赞一下(1人) 回复此楼
明察、慎思、笃行
4楼2010-10-04 09:07:19
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

bingmou

金虫 (著名写手)
★
小木虫(金币+0.5):给个红包，谢谢回帖交流
用这个脚本生成的POSCAR是怎么样的呢？
赞一下(1人) 回复此楼
5楼2010-10-05 09:54:29
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

gleerat

木虫 (正式写手)
引用回帖:
Originally posted by bingmou at 2010-10-05 09:54:29:
用这个脚本生成的POSCAR是怎么样的呢？

应该是脚本中的i值取值过小（i值取错了，不是我的本意），我改变了i值之后就好了。
不过错误提示倒是很让人疑惑。
赞一下 回复此楼
明察、慎思、笃行
6楼2010-10-05 19:20:43
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

bingmou

金虫 (著名写手)
★
小木虫(金币+0.5):给个红包，谢谢回帖交流
好吧，所以要看POSCAR之之前还要看看实验数据。计算不能离开数据
赞一下(1人) 回复此楼
7楼2010-10-05 20:05:59
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
相关版块跳转 我要订阅楼主 gleerat 的主题更新
71/1返回列表
普通表情 龙 兔 虎 猫 高级回复 (可上传附件)
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[考研] 一志愿郑大085600，310分求调剂 +3 李潇可 2026-03-26 3/150 2026-03-27 03:39 by wxiongid
[考研] 325求调剂 +5 李嘉图·S·路 2026-03-23 5/250 2026-03-27 00:42 by wxiongid
[考研] 311求调剂 +5 lin0039 2026-03-26 5/250 2026-03-26 22:43 by 学员8dgXkO
[考研] 08工学调剂 +13 用户573181 2026-03-20 20/1000 2026-03-26 21:22 by 用户573181
[考研] 324求调剂 +4 wysyjs25 2026-03-21 4/200 2026-03-26 20:38 by fmesaito
[考研] 一志愿211院校 344分 东北农业大学生物学学硕，求调剂 +3 丶风雪夜归人丶 2026-03-26 3/150 2026-03-26 19:35 by 求调剂zz
[考研] 一志愿 西北大学 总分282 英语一62 求调剂 +7 18419759900 2026-03-25 7/350 2026-03-26 16:07 by 不吃魚的貓
[考研] 0856求调剂 +8 zhn03 2026-03-25 9/450 2026-03-26 13:42 by zzll406
[考研] 一志愿天津大学339材料与化工求调剂 +3 江往卖鱼 2026-03-26 3/150 2026-03-26 09:42 by 王小欠i
[考研] 生物技术与工程 +3 1294608413 2026-03-25 4/200 2026-03-25 18:02 by 1294608413
[考研] 085600材料与化工调剂 +9 A-哆啦Z梦 2026-03-23 15/750 2026-03-25 11:18 by Ainin_
[考研] 上海电力大学材料防护与新材料重点实验室招收调剂研究生（材料、化学、电化学，环境） +4 我爱学电池 2026-03-23 4/200 2026-03-25 00:59 by 1027_324
[考研] 材料学求调剂 +6 Stella_Yao 2026-03-20 6/300 2026-03-25 00:37 by baoball
[考研] 一志愿武理085500机械专业总分300求调剂 +3 an10101 2026-03-24 7/350 2026-03-25 00:00 by 山鬼0-
[考研] 311求调剂 +3 冬十三 2026-03-24 3/150 2026-03-24 21:31 by peike
[考研] 材料292调剂 +8 橘颂思美人 2026-03-23 8/400 2026-03-24 16:33 by laoshidan
[考研] 求调剂一志愿武汉理工大学材料工程（085601） +5 WW.' 2026-03-23 7/350 2026-03-24 14:50 by sprinining
[考研] 材料/农业专业，07/08开头均可，过线就行 +3 呵唔哦豁 2026-03-23 4/200 2026-03-23 22:30 by 汪！？！
[考研] 319求调剂 +4 小力气珂珂 2026-03-20 4/200 2026-03-22 15:53 by ColorlessPI
[考研] 0703化学297求调剂 +3 Daisy☆ 2026-03-20 3/150 2026-03-21 17:45 by ColorlessPI
信息提示
关闭
请填处理意见
关闭