[交流] 【转载】计算不同z位置水能形成氢键数的VMD Tcl脚本 已有2人参与

proc numhbavg {sel fps1 fps2} {
set selin [atomselect top $sel]
set selbig [atomselect top "same resid as exwithin 3.5 of $sel"]
set k 0.0
set nonum 0
for {set i $fps1} {$i<=$fps2} {incr i} {
$selin frame $i
$selin update
$selbig frame $i
$selbig update
if {[$selin num]!=0} {
set a [llength [lindex [measure hbonds 3.5 35 $selbig $selin] 0]]
set b [llength [lindex [measure hbonds 3.5 35 $selin $selbig] 0]]
set c [llength [lindex [measure hbonds 3.5 35 $selin] 0]]
set k [expr $k+($a+$b+2*$c)*3.0/[$selin num]]
#puts "fps:$i $a+$b+[expr 2*$c] num_water:[expr [$selin num]/3.0] avg:[expr $k+($a+$b+2*$c)*3.0/[$selin num]]"
} else {incr nonum}
}
if {[expr $fps2-$fps1+1]==$nonum} {return "no result"}
return [expr $k/[expr $fps2-$fps1+1-$nonum]]
}