| 查看: 4269 | 回复: 12 | |||
| 当前只显示满足指定条件的回帖，点击这里查看本话题的所有回帖 | |||
[求助]
gromacs示例求助 已有1人参与
|
|||
|
如题，gromacs中文教程初学者，做溶菌酶那个到nvt平衡那一步产生tpr文件时老是出错，具体如下，求大佬指点一下，，， Command line: gmx grompp -f nvt.mdp -c em.gro -p topol.top -o nvt.tpr Ignoring obsolete mdp entry 'title' Setting the LD random seed to 1818880411 Generated 330891 of the 330891 non-bonded parameter combinations Generating 1-4 interactions: fudge = 0.5 Generated 330891 of the 330891 1-4 parameter combinations Excluding 3 bonded neighbours molecule type 'Protein_chain_A' turning all bonds into constraints... Excluding 2 bonded neighbours molecule type 'SOL' turning all bonds into constraints... Excluding 2 bonded neighbours molecule type 'SOL' Excluding 1 bonded neighbours molecule type 'CL' turning all bonds into constraints... Setting gen_seed to -691171019 Velocities were taken from a Maxwell distribution at 300 K Removing all charge groups because cutoff-scheme=Verlet ------------------------------------------------------- Program: gmx grompp, version 2018.1 Source file: src/gromacs/gmxpreprocess/grompp.cpp (line 2008) Fatal error: Cannot find position restraint file restraint.gro (option -r). From GROMACS-2018, you need to specify the position restraint coordinate files explicitly to avoid mistakes, although you can still use the same file as you specify for the -c option. For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors |
回复此楼» 猜你喜欢
职称评审没过，求安慰
已经有44人回复
-
回收溶剂求助
已经有7人回复
-
硝基苯如何除去
已经有3人回复
-
A期刊撤稿
已经有4人回复
-
垃圾破二本职称评审标准
已经有17人回复
-
投稿Elsevier的Neoplasia杂志，到最后选publishing options时页面空白，不能完成投稿
已经有22人回复
-
EST投稿状态问题
已经有7人回复
-
毕业后当辅导员了，天天各种学生超烦
已经有4人回复
-
求助文献
已经有3人回复
-
三无产品还有机会吗
已经有6人回复
|
本帖内容被屏蔽 |
8楼2020-01-06 11:49:57
112233ssg
新虫 (著名写手)
- 应助: 1 (幼儿园)
- 金币: 5276.3
- 散金: 1270
- 红花: 6
- 沙发: 2
- 帖子: 2121
- 在线: 114.9小时
- 虫号: 6691487
- 注册: 2017-06-05
- 性别: GG
- 专业: 无机非金属基复合材料
2楼2019-12-24 11:37:19
|
本帖内容被屏蔽 |
4楼2020-01-02 14:23:59
5楼2020-01-02 20:45:05