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Hongtao Nie, Hongbo Niu, Liqiang Zhao, Feng Yang, Xiwu Yan*, Guofan Zhang. 2015. Genetic diversity and structure of Manila clam (Ruditapes philippinarum) populations from Liaodong peninsula revealed by SSR markers. Biochemical Systematics and Ecology 59: 116-125. (SCI)

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Genetic diversity and structure of Manila clam (Ruditapes philippinarum) populations from Liaodong peninsula revealed by SSR markers
作者:Nie, HT (Nie, Hongtao)[ 1,2 ] ; Niu, HB (Niu, Hongbo)[ 1 ] ; Zhao, LQ (Zhao, Liqiang)[ 1 ] ; Yang, F (Yang, Feng)[ 1 ] ; Yan, XW (Yan, Xiwu)[ 1 ] ; Zhang, GF (Zhang, Guofan)[ 3 ]
BIOCHEMICAL SYSTEMATICS AND ECOLOGY
卷: 59 页: 116-125
DOI: 10.1016/j.bse.2014.12.029
出版年: APR 2015
查看期刊信息
摘要
Manila clam (Ruditapes philippinarum) is an important commercially marine bivalve, and its wild populations have been severely declining in the coast of China during the last decade. In this study, a set of 7 genomic simple sequence repeat (SSR), and 5 expressed sequences tag (EST)-derived SSR markers were analyzed on eight wild R. philippinarum populations to assess the genetic diversity and population differentiation. A total of 114 alleles were detected on 12 loci, and the number of alleles per locus in each population ranged from 2 to 11, and allelic richness per locus varied from 2.00 to 10.88 for each sample. The average of observed and expected heterozygosity ranged from 0.386 to 0.550, and from 0.533 to 0.707, respectively. Pairwise F-ST values indicated that all population pairs had significant genetic differentiation (overall F-ST = 0.242, P < 0.01). Cluster analysis using unweighted pair group method with the arithmetic mean (UPGMA) separated the eight populations into two groups. This study will shed light on the domestication and cultivation on population genetic diversity of R. philippinarum, and also provide the foundation for conservation of R. philippinarum germplasm resources in clam breeding practices. (C) 2015 Elsevier Ltd. All rights reserved.
关键词
作者关键词:Ruditapes philippinarum; Microsatellite; Genetic diversity; Genetic differentiation; Conservation
KeyWords Plus:CROSS-SPECIES AMPLIFICATION; MICROSATELLITE DNA; CRASSOSTREA-GIGAS; PACIFIC OYSTER; MARINE; DIFFERENTIATION; PHYLOGEOGRAPHY; CONSERVATION; VARIABILITY; SOFTWARE
作者信息
通讯作者地址: Yan, XW (通讯作者)
显示增强组织信息的名称 Dalian Ocean Univ, Engn & Technol Res Ctr Shellfish Breeding Liaonin, Dalian 116023, Peoples R China.
地址:
显示增强组织信息的名称 [ 1 ] Dalian Ocean Univ, Engn & Technol Res Ctr Shellfish Breeding Liaonin, Dalian 116023, Peoples R China
显示增强组织信息的名称 [ 2 ] Dalian Ocean Univ, Minist Agr, Key Lab Mariculture & Stock Enhancement North Chi, Dalian 116023, Peoples R China
显示增强组织信息的名称 [ 3 ] Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China
电子邮件地址:yanxiwu@dlou.edu.cn
基金资助致谢
基金资助机构授权号
National Natural Science Foundation of China
31302183
Program for Liaoning Excellent Talents in University
LJQ2014076
Cultivation Plan for Youth Agricultural Science and Technology Innovative Talents of Liaoning Province
2014004
Modern Agro-industry Technology Research System
CARS-48
National Basic Research Program of China, 973 Program
2010CB126402
National High Technology Research and Development Program, 863 Program
2012AA10A410-2
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出版商
PERGAMON-ELSEVIER SCIENCE LTD, THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
类别 / 分类
研究方向:Biochemistry & Molecular Biology; Environmental Sciences & Ecology; Evolutionary Biology
Web of Science 类别:Biochemistry & Molecular Biology; Ecology; Evolutionary Biology
文献信息
文献类型:Article
语种:English
入藏号: WOS:000353753500018
ISSN: 0305-1978
eISSN: 1873-2925
期刊信息
Impact Factor (影响因子): Journal Citation Reports®
其他信息
IDS 号: CH1AM
Web of Science 核心合集中的 "引用的参考文献": 51
Web of Science 核心合集中的 "被引频次": 0

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