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[求助]
PWscf 安装运行问题 已有1人参与
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各位虫友，我在集群node1上编译编译了pw.x 但运行不了出现如下情况 Checking atom-lsda...0 - <NO ERROR MESSAGE> : Could not convert index 1140850688 into a pointer The index may be an incorrect argument. Possible sources of this problem are a missing "include 'mpif.h'", a misspelled MPI object (e.g., MPI_COM_WORLD instead of MPI_COMM_WORLD) or a misspelled user variable for an MPI object (e.g., com instead of comm). [0] Aborting program ! [0] Aborting program! FAILED with error condition! Input: atom-lsda.in, Output: atom-lsda.out, Reference: atom-lsda.ref Aborting 求解释，求解决…… 如能顺利解决，愿奉金币…… |
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liqizuiyang
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贴几个cpnfigure，楼主参考下： 1. 集群，LFS任务调度系统，intelmpi，FFTW-3.3.4，MKL，静态链接 export MPIF90=mpiifort export F77=ifort export F90=ifort export FC=ifort export CFLAGS=-O2 export FCFLAGS=-O2 export FFLAGS=-O2 export MKLDIR=$HOME/lib/mkl-13.0.080 ./configure \ BLAS_LIBS="-Wl,--start-group $MKLDIR/libmkl_intel_lp64.a $MKLDIR/libmkl_sequential.a $MKLDIR/libmkl_core.a -Wl,--end-group" \ SCALAPACK_LIBS="-Wl,--start-group $MKLDIR/libmkl_scalapack_lp64.a $MKLDIR/libmkl_blacs_intelmpi_lp64.a -Wl,--end-group" \ FFT_LIBS="$HOME/lib/fftw-3.3.4/lib/libfftw3.a" 2. 天河1A，默认mpi，FFTW-3.3.4，MKL，静态链接 export MPIF90=mpif90 export F90=ifort export F77=ifort export FC=ifort export CFLAGS=-O2 export FFLAGS=-O2 export FCFLAGS=-O2 export MKL_LIB_PATH=/opt/intel/composer_xe_2013.0.079/mkl/lib/intel64 export FFT_LIB_PATH=$HOME/lib/fftw-3.3.4/lib ./configure \ BLAS_LIBS="-Wl,--start-group \ $MKL_LIB_PATH/libmkl_intel_lp64.a \ $MKL_LIB_PATH/libmkl_sequential.a \ $MKL_LIB_PATH/libmkl_core.a \ -Wl,--end-group" \ SCALAPACK_LIBS="-Wl,--start-group \ $MKL_LIB_PATH/libmkl_scalapack_lp64.a \ $MKL_LIB_PATH/libmkl_blacs_intelmpi_lp64.a \ -Wl,--end-group" \ FFT_LIBS="$FFT_LIB_PATH/libfftw3.a" 3. 单节点，openmpi + MKL + FFTW，动态链接 export MPIF90=mpif90 export F90=ifort export F77=ifort export FC=ifort export CFLAGS=-O2 export FCFLAGS=-O2 export FFLAGS=-O2 ./configure FFT_LIBS="$HOME/code/fftw-3.3.4/lib/libfftw3.a" |
13楼2015-01-19 14:11:49
2楼2015-01-16 21:23:00
516518
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3楼2015-01-17 05:19:48
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是并行版本 安装时，直接./configure, make没有成功。修改make.sys 修改前 SCALAPACK_LIBS = -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 修改后 SCALAPACK_LIBS = -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 以下是make.sys 求指导…… *************************************************************** # make.sys. Generated from make.sys.in by configure. # compilation rules .SUFFIXES : .SUFFIXES : .o .c .f .f90 # most fortran compilers can directly preprocess c-like directives: use # $(MPIF90) $(F90FLAGS) -c $< # if explicit preprocessing by the C preprocessor is needed, use: # $(CPP) $(CPPFLAGS) $< -o $*.F90 # $(MPIF90) $(F90FLAGS) -c $*.F90 -o $*.o # remember the tabulator in the first column !!! .f90.o: $(MPIF90) $(F90FLAGS) -c $< # .f.o and .c.o: do not modify .f.o: $(F77) $(FFLAGS) -c $< .c.o: $(CC) $(CFLAGS) -c $< # topdir for linking espresso libs with plugins TOPDIR = /public/home/cl_hqk/cjf/software/espresso-5.1.1 # DFLAGS = precompilation options (possible arguments to -D and -U) # used by the C compiler and preprocessor # FDFLAGS = as DFLAGS, for the f90 compiler # See include/defs.h.README for a list of options and their meaning # With the exception of IBM xlf, FDFLAGS = $(DFLAGS) # For IBM xlf, FDFLAGS is the same as DFLAGS with separating commas # MANUAL_DFLAGS = additional precompilation option(s), if desired # You may use this instead of tweaking DFLAGS and FDFLAGS # BEWARE: will not work for IBM xlf! Manually edit FDFLAGS MANUAL_DFLAGS = DFLAGS = -D__INTEL -D__FFTW -D__MPI -D__PARA -D__SCALAPACK $(MANUAL_DFLAGS) FDFLAGS = $(DFLAGS) $(MANUAL_DFLAGS) # IFLAGS = how to locate directories where files to be included are # In most cases, IFLAGS = -I../include IFLAGS = -I../include # MOD_FLAGS = flag used by f90 compiler to locate modules # Each Makefile defines the list of needed modules in MODFLAGS MOD_FLAG = -I # Compilers: fortran-90, fortran-77, C # If a parallel compilation is desired, MPIF90 should be a fortran-90 # compiler that produces executables for parallel execution using MPI # (such as for instance mpif90, mpf90, mpxlf90,...); # otherwise, an ordinary fortran-90 compiler (f90, g95, xlf90, ifort,...) # If you have a parallel machine but no suitable candidate for MPIF90, # try to specify the directory containing "mpif.h" in IFLAGS # and to specify the location of MPI libraries in MPI_LIBS MPIF90 = mpif90 #F90 = ifort CC = icc F77 = ifort # C preprocessor and preprocessing flags - for explicit preprocessing, # if needed (see the compilation rules above) # preprocessing flags must include DFLAGS and IFLAGS CPP = cpp CPPFLAGS = -P -C -traditional $(DFLAGS) $(IFLAGS) # compiler flags: C, F90, F77 # C flags must include DFLAGS and IFLAGS # F90 flags must include MODFLAGS, IFLAGS, and FDFLAGS with appropriate syntax CFLAGS = -O3 $(DFLAGS) $(IFLAGS) F90FLAGS = $(FFLAGS) -nomodule -fpp $(FDFLAGS) $(IFLAGS) $(MODFLAGS) FFLAGS = -O2 -assume byterecl -g -traceback # compiler flags without optimization for fortran-77 # the latter is NEEDED to properly compile dlamch.f, used by lapack FFLAGS_NOOPT = -O0 -assume byterecl -g -traceback # compiler flag needed by some compilers when the main is not fortran # Currently used for Yambo FFLAGS_NOMAIN = -nofor_main # Linker, linker-specific flags (if any) # Typically LD coincides with F90 or MPIF90, LD_LIBS is empty LD = mpif90 LDFLAGS = -static-intel LD_LIBS = # External Libraries (if any) : blas, lapack, fft, MPI # If you have nothing better, use the local copy : # BLAS_LIBS = /your/path/to/espresso/BLAS/blas.a # BLAS_LIBS_SWITCH = internal BLAS_LIBS = -lmkl_intel_lp64 -lmkl_sequential -lmkl_core BLAS_LIBS_SWITCH = external # If you have nothing better, use the local copy : # LAPACK_LIBS = /your/path/to/espresso/lapack-3.2/lapack.a # LAPACK_LIBS_SWITCH = internal # For IBM machines with essl (-D__ESSL): load essl BEFORE lapack ! # remember that LAPACK_LIBS precedes BLAS_LIBS in loading order LAPACK_LIBS = LAPACK_LIBS_SWITCH = external ELPA_LIBS_SWITCH = disabled SCALAPACK_LIBS = -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 # nothing needed here if the the internal copy of FFTW is compiled # (needs -D__FFTW in DFLAGS) FFT_LIBS = # For parallel execution, the correct path to MPI libraries must # be specified in MPI_LIBS (except for IBM if you use mpxlf) MPI_LIBS = # IBM-specific: MASS libraries, if available and if -D__MASS is defined in FDFLAGS MASS_LIBS = # ar command and flags - for most architectures: AR = ar, ARFLAGS = ruv AR = ar ARFLAGS = ruv # ranlib command. If ranlib is not needed (it isn't in most cases) use # RANLIB = echo RANLIB = ranlib # all internal and external libraries - do not modify FLIB_TARGETS = all LIBOBJS = ../flib/ptools.a ../flib/flib.a ../clib/clib.a ../iotk/src/libiotk.a LIBS = $(SCALAPACK_LIBS) $(LAPACK_LIBS) $(FFT_LIBS) $(BLAS_LIBS) $(MPI_LIBS) $(MASS_LIBS) $(LD_LIBS) # wget or curl - useful to download from network WGET = wget -O # Install directory PREFIX = $(INSTALLDIR) |
4楼2015-01-17 09:10:14
5楼2015-01-17 09:47:46
516518
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6楼2015-01-17 11:30:36
7楼2015-01-18 16:02:22
8楼2015-01-18 16:16:31
516518
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9楼2015-01-18 16:57:19
10楼2015-01-18 18:13:16
