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小木虫论坛-学术科研互动平台 » 计算模拟区 » 第一性原理 » MS » MS 在Ubuntu 12.04.1 LTS（LINUX）上的安装求助
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popeye.cn

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聪聪水手

优秀版主

[求助] MS 在Ubuntu 12.04.1 LTS（LINUX）上的安装求助

个人有个Lenovo的电脑，安装了 Ubuntu 12.01.
最近业务需要，要使用MS，想安装一个MS5.0

1，电脑系统的信息如下：
Memory,1.9GiB; Processor,Pentium(R) Dual-Core CPU E6700 @ 3.20GHz × 2;
OS type,32-bit; Disk,490.2GB;

2，有正版的MS5.0包 ： MaterialsStudio50UNIX_C13583.tgz

3，个人帐号为popeye

安装过程如下：
首先，打开终端，在popeye目录下输入tar后，解压。
popeye@popeye-Lenovo$~>tar -zxvf /home/popeye/Downloads/MaterialsStudio50UNIX_C13583.tgz > ~/ms50.tar.1.txt 2> ~/ms50.tar.err.1.txt;lt

其次，进入目录： popeye@popeye-Lenovo$~/MaterialsStudio50/UNIX>
输入：popeye@popeye-Lenovo$~/MaterialsStudio50/UNIX>./Install
Running Materials Studio installer for platform Linux...
Please specify an absolute destination path [/home/popeye/Accelrys/MaterialsStudio50] :

Please choose the packages you wish to install:

  1. AmorphousCell Server
  2. Blends Server
  3. CASTEP Server
  4. CCDC Servers (ConQuest, Motif)
  5. Conformers Server
  6. DFTB+ Server
  7. DMol3 Server
  8. DPD Server
  9. Discover Server
  10. Equilibria Server
  11. Forcite Server
  12. GULP Server
  13. Gaussian Server
  14. Kinetix Server
  15. MesoDyn Server
  16. Mesocite Server
  17. Mesotek Server
  18. Morphology Server
  19. ONETEP Server
  20. Polymorph Server
  21. QMERA Server
  22. QSAR Models Server
  23. Reflex+ Server
  24. Reflex QPA Server
  25. Reflex Server
  26. Sorption Server
  27. Structures Library
  28. VAMP Server
  29. Everything

Enter items to install (e.g. 1,2,5) , or Q to quit : 29

Starting installation...
Install log in /home/popeye/Accelrys/MaterialsStudio50/install.log

Installing everything...
Checking for dependencies for AmorphousCellServer:6
Checking for dependencies for AmorphousCell: None
Checking for dependencies for Licensing:1
Checking for dependencies for LicensePack: None
Aborting Materials Studio installation.

安装过程被终止了。

请问何解？
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1楼2013-01-08 15:31:08
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emilyoyang

木虫 (正式写手)

【答案】应助回帖

★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★
感谢参与，应助指数 +1
fzx2008: 金币+2, 谢谢交流！ 2013-01-08 22:58:32
popeye.cn: 金币+25, ★★★很有帮助, 谢谢...看来我只能换操作系统了...安装了CentOS,但上不了网;改成了Ubuntu,又用不了学术的软件...唉... 2013-01-09 17:08:55
ubuntu是安装不上ms的  debian系列的貌似都不行（反正我是没有安装成功过）
尝试过  Fedora CentOS 安装ms  都没有问题
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2楼2013-01-08 16:49:17
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普通回帖

souledge

专家顾问 (著名写手)

【答案】应助回帖

★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★ ★
感谢参与，应助指数 +1
popeye.cn: 金币+25, ★★★很有帮助, 谢谢...我折腾了一个下午,还没有折腾明白呢... 2013-01-09 17:07:19
在本区内搜索一下我的主题帖，有篇Fedora安装MS 5.0的，其中我自己的一个回帖就是Ubuntu安装MS 5.0。
由于自己不使用Ubuntu，所以当时给别人安装的系统上还剩一个临时目录的位置没有搞好，其他的都没有问题了。
其中，重要的几点是，第一，Ubuntu可能没有安装csh；第二，Ubuntu默认使用的是dash而不是常用的bash，这给很多MS的设置脚本造成了极端讨厌的麻烦；第三，Ubuntu缺乏很多安装和启动MS的库，这些库需要到Debian的源中去找。总而言之，大概是要折腾那么半个来下午才能折腾玩的，如果是第一次折腾的话~
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思想重于技巧，内涵重于表象
3楼2013-01-09 00:30:35
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popeye.cn

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聪聪水手

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引用回帖:
3楼: Originally posted by souledge at 2013-01-09 00:30:35
在本区内搜索一下我的主题帖，有篇Fedora安装MS 5.0的，其中我自己的一个回帖就是Ubuntu安装MS 5.0。
由于自己不使用Ubuntu，所以当时给别人安装的系统上还剩一个临时目录的位置没有搞好，其他的都没有问题了。
其 ...

谢谢。
我根据您的帖子的提示，好像安装成功了。

请问能够说得稍微详细一点么？
例如，缺少哪些库，如何安装？

新手，请谅解。
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4楼2013-01-12 16:20:35
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量化新手

新虫 (正式写手)
我也按照你的方式安装了，没有出错啊，
不过我的安装命令是./Install --type cluster
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5楼2013-01-14 17:39:32
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量化新手

新虫 (正式写手)
引用回帖:
3楼: Originally posted by souledge at 2013-01-09 00:30:35
在本区内搜索一下我的主题帖，有篇Fedora安装MS 5.0的，其中我自己的一个回帖就是Ubuntu安装MS 5.0。
由于自己不使用Ubuntu，所以当时给别人安装的系统上还剩一个临时目录的位置没有搞好，其他的都没有问题了。
其 ...

你好，Ubuntu使用的是dash这个怎么改呢。谢谢
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6楼2013-01-16 10:42:15
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popeye.cn

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聪聪水手

优秀版主
感谢 souledge 的指点，参考 http://muchong.com/bbs/viewthread.php?tid=2616599 后，安装信息，如下：

popeye@popeye-Lenovo$~/MaterialsStudio50/UNIX/installer>csh call_lp_setup.csh
The program 'csh' can be found in the following packages:
* csh
* tcsh
Try: sudo apt-get install

以上的提醒是没有安装csh

以下是安装过程
popeye@popeye-Lenovo$/home>sudo apt-get install csh（回车后输入密码，然后等待自动安装完成）
[sudo] password for popeye:
Reading package lists... Done
Building dependency tree      
Reading state information... Done
The following packages were automatically installed and are no longer required:
  linux-headers-3.2.0-29 linux-headers-3.2.0-29-generic-pae
Use 'apt-get autoremove' to remove them.
The following NEW packages will be installed:
  csh
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 238 kB of archives.
After this operation, 401 kB of additional disk space will be used.
Get:1 http://run6.hit.edu.cn/ubuntu/ precise/universe csh i386 20110502-2ubuntu1 [238 kB]
Fetched 238 kB in 0s (1,143 kB/s)
Selecting previously unselected package csh.
(Reading database ... 267042 files and directories currently installed.)
Unpacking csh (from .../csh_20110502-2ubuntu1_i386.deb) ...
Processing triggers for doc-base ...
Processing 1 added doc-base file...
Registering documents with scrollkeeper...
Processing triggers for man-db ...
Setting up csh (20110502-2ubuntu1) ...
update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode.
popeye@popeye-Lenovo$/home>lt

popeye@popeye-Lenovo$~/MaterialsStudio50/UNIX>./Install
Running Materials Studio installer for platform Linux...
Please specify an absolute destination path [/home/popeye/Accelrys/MaterialsStudio50] :
/home/popeye/Accelrys/MaterialsStudio50 already exists. Do you wish to continue? [Y/n]: y

Please choose the packages you wish to install:

  1. AmorphousCell Server
  2. Blends Server
  3. CASTEP Server
  4. CCDC Servers (ConQuest, Motif)
  5. Conformers Server
  6. DFTB+ Server
  7. DMol3 Server
  8. DPD Server
  9. Discover Server
  10. Equilibria Server
  11. Forcite Server
  12. GULP Server
  13. Gaussian Server
  14. Kinetix Server
  15. MesoDyn Server
  16. Mesocite Server
  17. Mesotek Server
  18. Morphology Server
  19. ONETEP Server
  20. Polymorph Server
  21. QMERA Server
  22. QSAR Models Server
  23. Reflex+ Server
  24. Reflex QPA Server
  25. Reflex Server
  26. Sorption Server
  27. Structures Library
  28. VAMP Server
  29. Everything

Enter items to install (e.g. 1,2,5) , or Q to quit : 29

Starting installation...
Install log in /home/popeye/Accelrys/MaterialsStudio50/install.log

Installing everything...
Checking for dependencies for AmorphousCellServer:6
Checking for dependencies for AmorphousCell: None
Checking for dependencies for Licensing:1
Checking for dependencies for LicensePack: None








          Initializing InstallShield Wizard........
          Launching InstallShield Wizard........


-------------------------------------------------------------------------------
Accelrys License Pack 7.6.2 - InstallShield Wizard

Welcome to the InstallShield Wizard for Accelrys License Pack 7.6.2

The InstallShield Wizard will install Accelrys License Pack 7.6.2 on your
computer.
To continue, choose Next.

Accelrys License Pack 7.6.2
Accelrys Software Inc.
http://www.accelrys.com



Press 1 for Next, 3 to Cancel or 5 to Redisplay [1] 1

-------------------------------------------------------------------------------
Accelrys License Pack 7.6.2 - InstallShield Wizard

Accelrys License Pack 7.6.2 Install Location

Please specify a directory or press Enter to accept the default directory.

Destination Directory [/home/popeye/Accelrys]

Press 1 for Next, 2 for Previous, 3 to Cancel or 5 to Redisplay [1] 1
/home/popeye/Accelrys/LicensePack/etc/lp_cshrc: No such file or directory.

-------------------------------------------------------------------------------

IMPORTANT: It is recommended to stop the license manager, if currently running,
prior to updating the License Pack used by the license server and to restart
the license manager after completing the installation.


-------------------------------------------------------------------------------
Accelrys License Pack 7.6.2 - InstallShield Wizard

Select the features for "Accelrys License Pack 7.6.2" you would like to
install:

   Accelrys License Pack 7.6.2

   To select/deselect a feature or to view its children, type its number:

     1.  [x] LicensePack (required) (installed)
     2.  [x] Compatibility LicensePack (required) (installed)

   The Compatibility LicensePack is required for supporting Accelrys software
   shipped with License Packs 6.x or lower and to support IRIX and Solaris
   platforms. See License Pack documentation for complete list of Accelrys
   software supported by this License Pack.

   Other options:

     0. Continue installing

   Enter command [0] 0


Press 1 for Next, 2 for Previous, 3 to Cancel or 5 to Redisplay [1] 1

-------------------------------------------------------------------------------
Accelrys License Pack 7.6.2 - InstallShield Wizard

Accelrys License Pack 7.6.2 will be installed in the following location:

/home/popeye/Accelrys/LicensePack

with the following features:

LicensePack
Compatibility LicensePack

for a total size:

168.9 MB

Press 1 for Next, 2 for Previous, 3 to Cancel or 5 to Redisplay [1] 1
rm: cannot remove `LIC_CONFIG': No such file or directory

-------------------------------------------------------------------------------
Accelrys License Pack 7.6.2 - InstallShield Wizard


Installing Accelrys License Pack 7.6.2. Please wait...


|-----------|-----------|-----------|------------|
0%         25%         50%         75%        100%
||||||||||||||||||||||||||||||||||||||||||||||||||

Creating uninstaller...


Finalizing the Vital Product Data Registry. Please wait...


Configuring License Pack

-------------------------------------------------------------------------------
Accelrys License Pack 7.6.2 - InstallShield Wizard

The InstallShield Wizard has successfully installed Accelrys License Pack
7.6.2. Choose Finish to exit the wizard.

Press 3 to Finish or 5 to Redisplay [3] 3

Checking for dependencies for SharedSetup:4
Checking for dependencies for IntelRuntime: None
Checking for dependencies for HPMPI:1
Do HP-MPI Installation -- MesoDyn server selected.
No usable HP-MPI installation could be detected.

HP-MPI version 2.03.01.00 or higher must be installed if you intend to run
any computations in parallel.  To achieve this, run the commands:

        su root
        rpm -ivh Linux/hpmpi/hpmpi-2.03.01.00-20090402r.i386.rpm

Then restart the Materials Studio installer.
See the HP-MPI release notes in Linux/hpmpi/hp-mpi-2.03.01.00.rn.pdf for
further information.
Alternatively you can install hpmpi to a folder you have write permissions for.
Perform non-root installation? [y/N]  y
rpm2cpio not found, sorry but this tool is necessary
for performing this operation.
Proceed with installation without hpmpi? [Y/n]  y
Should HPMPI use SSH? [Y/n]:  y
Configuring HP-MPI installation
Setting up machines.LINUX file in /home/popeye/Accelrys/MaterialsStudio50/share/data
Checking for dependencies for GatewayTmp: None
Please specify the location for temporary files (required for certain
computational servers), e.g., /tmp or /usr/tmp.  Enter ./tmp if you prefer
to create these files in the directory where the job is being run. Please
note that the ./tmp setting could create additional I/O overhead and thereby
affect performance [/tmp] :
Checking for dependencies for GatewayScripts: None
Configuring environment setup
Setting installation path in environment setup script files
Checking for dependencies for Gateway:4
Checking for dependencies for perl: None
Checking for dependencies for apache: None
Configuring Gateway to use default port
../../bin/perl: 4: [: ../..: unexpected operator
Configuring Gateway for supported queueing systems
../../bin/perl: 4: [: ../..: unexpected operator
Checking for dependencies for PPComponents: None
Checking for dependencies for Discover: None
Creating Stand alone AmorphousCell script /home/popeye/Accelrys/MaterialsStudio50/etc/AmorphousCell/bin/RunAmorphousCell.sh
Checking for dependencies for CASTEPServer:4
Checking for dependencies for CASTEP: None
Checking for dependencies for MatServer:34
Checking for dependencies for MKL:1
Checking for dependencies for boost: None
Checking for dependencies for xpcom: None
Checking for dependencies for xpidl: None
Checking for dependencies for WinCE: None
Checking for dependencies for MS3rdParty: None
Checking for dependencies for ApplicationComponents: None
Checking for dependencies for ApplicationLibraries: None
Checking for dependencies for Container: None
Checking for dependencies for ContainerInterfaces: None
Checking for dependencies for ContainerRootConsumer: None
Checking for dependencies for ContainerUtils: None
Checking for dependencies for DataModel: None
Checking for dependencies for Documents: None
Checking for dependencies for DocumentsInterfaces: None
Checking for dependencies for Libraries: None
Checking for dependencies for SDK: None
Checking for dependencies for Services: None
Checking for dependencies for ServicesInterfaces: None
Checking for dependencies for Scripting: None
Checking for dependencies for Simulations: None
Checking for dependencies for ViewersInterfaces: None
Checking for dependencies for Visualizer: None
Checking for dependencies for VisualizerInterfaces: None
Checking for dependencies for QSAR: None
Checking for dependencies for QSARApplications: None
Checking for dependencies for Polymer: None
Checking for dependencies for MSExampleData: None
Creating Stand alone MatServer script /home/popeye/Accelrys/MaterialsStudio50/etc/MatServer/bin/RunMatServer.sh
Checking for dependencies for Quantum: None
Creating Stand alone CASTEP script /home/popeye/Accelrys/MaterialsStudio50/etc/CASTEP/bin/RunCASTEP.sh
Checking for dependencies for DMol3Server:4
Checking for dependencies for DMol3: None
Creating Stand alone DMol3 script /home/popeye/Accelrys/MaterialsStudio50/etc/DMol3/bin/RunDMol3.sh
Checking for dependencies for DPDServer:7
Checking for dependencies for DPD: None
Creating Stand alone DPD script /home/popeye/Accelrys/MaterialsStudio50/etc/DPD/bin/RunDPD.sh
Checking for dependencies for DiscoverServer:6
Creating Stand alone Discover script /home/popeye/Accelrys/MaterialsStudio50/etc/Discover/bin/RunDiscover.sh
Checking for dependencies for EquilibriaServer:7
Checking for dependencies for Equilibria: None
Creating Stand alone Equilibria script /home/popeye/Accelrys/MaterialsStudio50/etc/Equilibria/bin/RunEquilibria.sh
Checking for dependencies for GaussianServer:5
Checking for dependencies for Gaussian: None
You have chosen to install the Gaussian server but Gaussian seems not to be
installed on this machine.  Before using the Gaussian server please make sure
that Gaussian is installed.

Press ENTER to continue:
Checking for dependencies for MesoDynServer:6
Checking for dependencies for MesoDyn: None
Creating Stand alone MesoDyn script /home/popeye/Accelrys/MaterialsStudio50/etc/MesoDyn/bin/RunMesoDyn.sh
Checking for dependencies for ReflexPlusServer:6
Checking for dependencies for Analytical: None
Checking for dependencies for ReflexServer:5
Checking for dependencies for PowderIndexing: None
Checking for dependencies for Structures:1
Checking for dependencies for MSStructures: None
Checking for dependencies for VAMPServer:6
Checking for dependencies for VAMP: None
Creating Stand alone VAMP script /home/popeye/Accelrys/MaterialsStudio50/etc/VAMP/bin/RunVAMP.sh
Checking for dependencies for QMERAServer:7
Checking for dependencies for QMERA: None
Checking for dependencies for GULP: None
Creating Stand alone QMERA script /home/popeye/Accelrys/MaterialsStudio50/etc/QMERA/bin/RunQMERA.sh
Checking for dependencies for GULPServer:6
Creating Stand alone GULP script /home/popeye/Accelrys/MaterialsStudio50/etc/GULP/bin/RunGULP.sh
Checking for dependencies for ONETEPServer:6
Checking for dependencies for ONETEP: None
Creating Stand alone ONETEP script /home/popeye/Accelrys/MaterialsStudio50/etc/ONETEP/bin/RunONETEP.sh
Checking for dependencies for MesotekServer:6
Checking for dependencies for Mesotek: None
Creating Stand alone Mesotek script /home/popeye/Accelrys/MaterialsStudio50/etc/Mesotek/bin/RunMesotek.sh
Checking for dependencies for KinetixServer:5
Checking for dependencies for Kinetix: None
Creating Stand alone Kinetix script /home/popeye/Accelrys/MaterialsStudio50/etc/Kinetix/bin/RunKinetix.sh
Checking for dependencies for BlendsServer:2
Checking for dependencies for Docking: None
Checking for dependencies for ConformerSearchServer:2
Checking for dependencies for DFTBServer:4
Checking for dependencies for DFTB: None
Checking for dependencies for Nano: None
Creating Stand alone DFTB script /home/popeye/Accelrys/MaterialsStudio50/etc/DFTB/bin/RunDFTB.sh
Checking for dependencies for ForciteServer:2
Checking for dependencies for MesociteServer:3
Checking for dependencies for Meso: None
Checking for dependencies for MorphologyServer:2
Checking for dependencies for Crystallization: None
Checking for dependencies for PolymorphServer:2
Checking for dependencies for QSARModelsServer:2
Checking for dependencies for FastDesc: None
Checking for dependencies for ReflexQPAServer:2
Checking for dependencies for SorptionServer:2
Checking for dependencies for CCDCServers:3
Checking for dependencies for CCDC: None
You have chosen to install the CCDC servers, but neither ConQuest nor Motif
appear to be installed. Please make sure that these servers are present before
attempting to use them.

Press ENTER to continue:
Checking for dependencies for QSARInterfaces: None
If you would like the Gateway at /home/popeye/Accelrys/MaterialsStudio50/etc
to be started automatically when the system is restarted
you will need to get your administrator to place a copy of
/home/popeye/Accelrys/MaterialsStudio50/etc/Gateway/msgateway_control_18888 in /etc/rc.d/init.d/msgateway_control_18888
and run:

/sbin/chkconfig --add msgateway_control_18888


Please refer to the installation instructions for more details.

A Materials Studio Gateway provides access to server components
installed  on your machine. By default the Gateway is configured
to use minimum security. You can use the Gateway configuration
tools after installation to enforce higher levels of security.
The servers in this installation will not be available from the
Materials Studio visualizer until the Gateway has been started.
If you choose not to start the Gateway now you will need to start
it manually after this installation has completed.

Please refer to the help text on the CD for instructions on how
to start, stop, and customize your Gateway configuration.

Would you like to start the Gateway service now? [Y/n]: y
Starting gateway...
../../bin/perl: 4: [: ../..: unexpected operator
Registering XPCom components; this may take a while...

System configuration details for HP-MPI
These checks assume that the default user authentication mechanism is being
used. Your System Administrator may have chosen to use an alternative
mechanism. If you find that parallel jobs fail you should consult your
System Administrator and ask them to perform appropriate configuration
work. For further details please refer your System Administrator to the
installation documentation under the info folder on your installation CD


Checking remote shell settings for MPI

openssh package is installed.


1) Enter temporary license password
2) Set connection to license server
3) List command line license administration tools
99) Finished with license configuration

Choose one of the above options:
Choose one of the above options: 99
Exiting program
Press ENTER to continue:

Materials Studio installation has completed.
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我赶着驴，你骑着马，咱俩携手闯天涯！-★--★--★-★-★--交颈千年，相随万里！--★-★-★-
7楼2013-01-22 13:19:52
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量化新手

新虫 (正式写手)
引用回帖:
7楼: Originally posted by popeye.cn at 2013-01-22 13:19:52
感谢 souledge 的指点，参考 http://muchong.com/bbs/viewthread.php?tid=2616599 后，安装信息，如下：

popeye@popeye-Lenovo$~/MaterialsStudio50/UNIX/installer>csh call_lp_setup.csh
The program 'csh'  ...

请问一下，你这样安装后可以使用并行么？
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8楼2013-01-22 16:38:06
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popeye.cn

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8楼: Originally posted by 量化新手 at 2013-01-22 16:38:06
请问一下，你这样安装后可以使用并行么？...

是否能够使用并行，我个人不太懂，推荐您看一下这个：
Configuring HP-MPI on parallel Linux systems
ftp://210.45.212.113/incoming/up ... info_UNIX.htm#hpmpi

我的本意是用自己的电脑（Ubuntu）做一些前期的工作，然后把作业提交到别的服务器上面。
可我理解到我安装的这个软件是直接安装在服务器上，计算从windows 客户端（Windows client ,no linux client）提交上来的作业。
Users must download and install the Materials Studio client to their Windows based PC. No desktop Linux of Macintosh versions are currently available. Please refer to the download and installation instructions for information on how to download and install the Windows client.
（cf：http://rcc.its.psu.edu/resources/software/matstudio/ ）

另，官网还有一个update，不知道对你是否有用：
Materials Studio 5.0 - Update 1
http://accelrys.com/resource-cen ... o50/mstudio501.html
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9楼2013-01-23 08:14:12
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量化新手

新虫 (正式写手)
引用回帖:
9楼: Originally posted by popeye.cn at 2013-01-23 08:14:12
是否能够使用并行，我个人不太懂，推荐您看一下这个：
Configuring HP-MPI on parallel Linux systems
ftp://210.45.212.113/incoming/upload/Windows/MS55/ms55/Info/installation_info_UNIX.htm#hpmpi

我的 ...

是的，在服务器上安装MS，在自己电脑（客户端）安装win版MS，然后直接从客户端提交任务到服务器端，提交作业的时候是默认不使用并行的，你可在setup中设置多核，你可以试一下，如果使用多核提交作业时没有提示出错应该问题不大，我现在就是提示有问题，不能多核并行
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新手上路，请多关照
10楼2013-01-23 12:29:19
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