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RosettaDock is that protein backbone

2¡¢conformations typically do not change much upon association. This holds for many proteins, but not all. If you believe that the backbone of one of your partners is flexible, you should be cautious with the results. docking of a short, flexible peptide (~10 residues) is not likely to work, since a peptide lacks the tertiary interactions which stabilize full-size domains (75-250 residues). ¿´Á˰ëÌìÒ²²»ÖªÔÚpdbÄÄÀï¼ÓTER£¬¶øÇÒÅä ÌåÇ¡ºÃ¾ÍÊÇ7¸öaa£¬»á²»»ábackbone conformation¸Ä±ä°¡£¿ÊµÔÚ±§Ç¸¸÷λ´ó ÏÀ£¬²»ÊÇѧҩ»¯µÄÉ˲»Æð°¡£¡£¡

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jamesxue: ½ð±Ò+4, ¡ï¡ï¡ï¡ï¡ï×î¼Ñ´ð°¸, Ì«¸øÁ¦ÁË£¡£¡£¡ 2013-01-07 15:55:05
rosetta dockÊÇ×öµ°°×-µ°°×¶Ô½ÓµÄ~rosetta 3.4ÀïÓе¥¶ÀµÄrosettaligand, Õâ¸öÄ£¿é²ÅÊÇ×öµ°°×-С·Ö×ӶԽӵİ¡~ÄãµÄ7¸öaaµÄÅäÌåÃ²ËÆÊǸö¶àëÄ£¬ºÃÏñRosettaÀﻹÓиöflexpepµÄ¶Ô½ÓÄ£¿é£¬ÄǸö²ÅÊÇ×îÊʺÏÄãµÄ°É~

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2Â¥2013-01-07 08:06:25
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2Â¥: Originally posted by zh1987hs at 2013-01-07 08:06:25
rosetta dockÊÇ×öµ°°×-µ°°×¶Ô½ÓµÄ~rosetta 3.4ÀïÓе¥¶ÀµÄrosettaligand, Õâ¸öÄ£¿é²ÅÊÇ×öµ°°×-С·Ö×ӶԽӵİ¡~ÄãµÄ7¸öaaµÄÅäÌåÃ²ËÆÊǸö¶àëÄ£¬ºÃÏñRosettaÀﻹÓиöflexpepµÄ¶Ô½ÓÄ£¿é£¬ÄǸö²ÅÊÇ×îÊʺÏÄãµÄ°É~

лл£¡¸ÒÎÊÏÂǰ±²£ºÎÒÓõÄÊÇRosetta ÍøÒ³°æ£¬http://rosettaserver.graylab.jhu.edu/docking/submitÊDz»ÊDZØÐë×°Rosetta²ÅÄܽøRosetta flexpepÄ£¿é£¿Ð»Ð»Ç°±²~£¡£¡£¡
3Â¥2013-01-07 15:54:41
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3Â¥: Originally posted by jamesxue at 2013-01-07 15:54:41
лл£¡¸ÒÎÊÏÂǰ±²£ºÎÒÓõÄÊÇRosetta ÍøÒ³°æ£¬http://rosettaserver.graylab.jhu.edu/docking/submitÊDz»ÊDZØÐë×°Rosetta²ÅÄܽøRosetta flexpepÄ£¿é£¿Ð»Ð»Ç°±²~£¡£¡£¡...

http://flexpepdock.furmanlab.cs.huji.ac.il/
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4Â¥2013-01-08 08:11:18
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