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秋雨子

金虫 (小有名气)

引用回帖:
18楼: Originally posted by asaka at 2011-12-10 16:33:17:
以上作者只考虑闭壳层计算的情况,你有开壳层的计算吗?那时候你需要总的HOMO,LUMO还是分别alpha以及beta的HOMO和LUMO?
他们的程序都只有一点小问题,相信LZ可以搞定。
mchen10 的程序少了一个 |,多了一个奇怪 ...

非常感谢高手的赐教,我的分子群全是闭壳层的,当然也有许多别的分子信息需要提取,那些都相对简单一些,自己可以学着搞定!非常感谢!
To the time to life, rather than to life in time
21楼2011-12-11 20:10:47
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秋雨子

金虫 (小有名气)

送鲜花一朵
引用回帖:
19楼: Originally posted by mchen10 at 2011-12-11 04:06:32:
[code]#!/bin/bash
# print homo lumo energy of gaussian output
# usage: print_homo_lumo filename(s)
for file in "$@"
do
echo $file
tac $file | tr "\n" "@" | egre ...

谢谢不吝赐教!我会努力的学习的,才接触脚本,总是觉得深奥难懂,心理的排斥应该克服!总是想绕过难题去走捷径是不行的!非常感谢!
To the time to life, rather than to life in time
22楼2011-12-11 20:13:09
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ZDBWHZ

金虫 (正式写手)

`ls -l *.log | awk '{print $9}' | sed 's/.log//g' > file_list`
这一行中的9可能是8,需要自己数一下ls -l *.log出现多少列。
23楼2011-12-12 13:28:55
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ZDBWHZ

金虫 (正式写手)

再来个Fortran
PROGRAM HOLU2
!
! Program to extract HOMO and LUMO data from multiple Gaussian output files
! SRK 2011/06/30
! SRK 2011/10/18 Modified to produce 3 output files, bug fix
!
! Input : A file containing a list of filenames, one per line
! Output:  One line per input filename, 3 columns, holding the filename, the HOMO and the LUMO
!          Input filename, HOMO and LUMO are written to file 'HOMOandLUMO.txt'
!          HOMO is written to file 'HOMO.txt'
!          LUMO is written to file 'LUMO.txt'
!
IMPLICIT NONE
! Variable declarations
INTEGER, PARAMETER :: inunit=22, listunit=23 ! Unit numbers for input files and list file
INTEGER, PARAMETER :: hlunit=24, hunit=25, lunit=26 ! Unit numbers for output files
INTEGER :: i          ! Loop variable
INTEGER :: n          ! Number of characters in current line
INTEGER :: stat       ! Holds the current state of the input file, 0=OK
INTEGER :: numfiles   ! Number of filenames detected in the input
INTEGER :: blockflag  ! Flag variable to find the correct HOMO-LUMO data
CHARACTER (LEN=100) :: listname ! File containing the list of filenames to be processed
CHARACTER (LEN=100) :: inpfile  ! Current input filename
CHARACTER (LEN=100) :: line     ! Current line in the input file
CHARACTER (LEN=100) :: prevline ! Previous line in the input file
CHARACTER (LEN=9) :: homostring, lumostring ! Strings containing the HOMO/LUMO eigenvalues

!
! Executable code

WRITE (*,*) 'HOLU - a program to extract HOMO and LUMO data'
WRITE (*,*) 'Enter the name of an input file containing a list of filenames (no blank lines!)'
READ (*,'(A)') listname
OPEN(listunit,FILE=listname)
!
! Find out how many files are in the list
numfiles = 0
stat = 0
DO
   READ(listunit,'(A)',iostat=stat) line
   IF (stat /= 0) EXIT
   numfiles = numfiles + 1
END DO
CLOSE(listunit)
WRITE (*,*) 'Detected ',numfiles,' lines in list file'

!
! Open output files
OPEN(hlunit,FILE='HOMOandLUMO.txt')
OPEN(hunit,FILE='HOMO.txt')
OPEN(lunit,FILE='LUMO.txt')

! Now loop over these files
OPEN(listunit,FILE=listname)
DO i = 1, numfiles
   READ(listunit,'(A)') inpfile
   OPEN(inunit,file=TRIM(inpfile))
   blockflag = 0
!
! Search for the needed information in the input file
   prevline = ''
   DO
      READ(inunit,FMT='(A)',IOSTAT=stat) line ! Read in the next line of the file using '(A)' format
      IF (stat /= 0 ) EXIT
      IF (index(line,'Alpha virt.') > 0 ) THEN   ! found a line listing virtual states
        IF (blockflag == 0) blockflag = 1
        IF (blockflag == 2) THEN                    ! we have found the second block
           lumostring = line(30:40)                 ! first number on this line
           n = len_trim(prevline)
           homostring = prevline(n-8:n)             ! last number on previous line
           WRITE(*,*) TRIM(inpfile),' ', 'HOMO', ' ', homostring,' ', 'LUMO', ' ', lumostring
           WRITE(hlunit,'(A),(A),(A),(A)') TRIM(inpfile),' ', 'HOMO', ' ', homostring,' ', 'LUMO', ' ', lumostring
           WRITE(hunit,'(A)') TRIM(inpfile),' ', 'HOMO', ' ', homostring
           WRITE(lunit,'(A)') TRIM(inpfile),' ', 'LUMO', ' ', lumostring
           EXIT
        END IF
      ELSE
        IF (blockflag == 1) blockflag = 2      
      END IF
      prevline = line
   END DO
   CLOSE(inunit)
END DO


! Close all files that are still open
CLOSE(listunit)
CLOSE(hlunit)
CLOSE(hunit)
CLOSE(lunit)

!
END PROGRAM HOLU2
这是source code,需要编译。
编译后,`ls -l *.log | awk '{print $9}' > file_list
再运行编译后的程序,输入文件就是file_list。所有的输出结果都显示在屏幕上,可以拷入txt文档,进行后续的计算。
24楼2011-12-12 13:37:45
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秋雨子

金虫 (小有名气)

高手如云啊!学习了学习了!可以成为经典贴了!
To the time to life, rather than to life in time
25楼2011-12-13 23:43:07
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