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Illusionist银虫 (正式写手)
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[求助]
该物质是对称结构，计算结果却是HOMO在左，LUMO在右。
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安装g09说明书，计算荧光光谱的方法算了一遍。 又有直接使用 # opt freq td=(nstates=6,root=1) b3lyp/6-31+g(d,p) scrf=(solvent=n,n-dimethylformamide) geom=connectivity 然后SP算了一遍。 结果都是一样的。 该物质是对称结构，在DMF溶剂中计算，结果却是HOMO在左，LUMO在右，不再对称了。 是溶剂选择的模型有问题 还是什么？ 新手，求教！ 不胜感激。 （不方便上图，抱歉） |
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Illusionist
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3楼2011-12-04 10:52:20
Illusionist
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Illusionist: 回帖置顶 2011-12-04 14:04:30
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================================= Model : PCM. Atomic radii : UFF (Universal Force Field). Polarization charges : Total charges. Charge compensation : None. Solution method : Matrix inversion. Cavity type : Scaled VdW (van der Waals Surface) (Alpha=1.100). Cavity algorithm : GePol (No added spheres) Default sphere list used, NSphG= 56. Lebedev-Laikov grids with approx. 5.0 points / Ang**2. Smoothing algorithm: Karplus/York (Gamma=1.0000). Polarization charges: spherical gaussians, with point-specific exponents (IZeta= 3). Self-potential: point-specific (ISelfS= 7). Self-field : sphere-specific E.n sum rule (ISelfD= 2). 1st derivatives : Analytical E(r).r(x)/FMM algorithm (CHGder, D1EAlg=3). Cavity 1st derivative terms included. Solvent : n,n-DiMethylFormamide, Eps= 37.219000 Eps(inf)= 2.046330 |
4楼2011-12-04 11:53:15
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2楼2011-12-04 09:12:09
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5楼2011-12-04 12:48:07
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6楼2011-12-04 13:51:47
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按照说明书上计算，到第四步的时候，没有使用OPT=RCFC，而直接使用OPT。因为使用OPT=RCFC无法进行。这一步之前，看的HOMO，LUMO 都是对称的·。 Step 1: Ground state geometry optimization and frequencies (equilibrium solvation). This is a standard Opt Freq calculation on the ground state including PCM equilibrium solvation. %chk=01-ac # B3LYP/6-31+G(d,p) Opt Freq SCRF=(Solvent=Ethanol) Acetaldehyde ground state 0 1 C C,1,RA X,2,1.,1,A O,2,RB,3,A,1,180.,0 X,1,1.,2,90.,3,0.,0 H,1,R1,2,A1,5,0.,0 H,1,R23,2,A23,5,B23,0 H,1,R23,2,A23,5,-B23,0 H,2,R4,1,A4,3,180.,0 RA=1.53643 RB=1.21718 R1=1.08516 R23=1.08688 R4=1.10433 A=62.1511 A1=110.51212 A23=109.88119 A4=114.26114 B23=120.56468 Step 2: Vertical excitation with linear response solvation. This is a TD-DFT calculation of the vertical excitation, therefore at the ground state equilibrium geometry, with the default solvation: linear response, non-equilibrium. We perform a single-point TD-DFT calculation, which defaults to non-equilibrium solvation. The results of this job will be used to identify which state or states are of interest and their ordering. These results give a reasonable description of the solvation of the excited state, but not quite as good as that from a state-specific solvation calculation. In this case, we see that the n->π* state is the first excited state. Next, we will use the state-specific method to produce a better description of the vertical excitation step. %chk=02-ac # B3LYP/6-31+G(d,p) TD=NStates=6 SCRF=(Solvent=Ethanol) Geom=Check Guess=Read Acetaldehyde: linear response vertical excited states 0 1 Step 3: State-specific solvation of the vertical excitation. This will require two job steps: first the ground state calculation is done, specifying NonEq=write in the PCM input section, in order to store the information about non-equilibrium solvation based on the ground state. Second, the actual state-specific calculation is done, reading in the necessary information for non-equilibrium solvation using NonEq=read. %chk=03-ac # B3LYP/6-31+G(d,p) SCRF=(Solvent=Ethanol,Read) Geom=Check Guess=Read Acetaldehyde: prepare for state-specific non-eq solvation by saving the solvent reaction field from the ground state 0 1 NonEq=write --link1-- %chk=03-ac # B3LYP/6-31+G(d,p) TD(NStates=6,Root=1) SCRF=(Solvent=Ethanol,ExternalIteration,Read) Geom=Check Guess=Read Acetaldehyde: read non-eq solvation from ground state and compute energy of the first excited with the state-specific method 0 1 NonEq=read Step 4: Relaxation of the excited state geometry. Next, we perform a TD-DFT geometry optimization, with equilibrium, linear response solvation, in order to find the minimum energy point on the excited state potential energy surface. Since this is a TD-DFT optimization, the program defaults to equilibrium solvation. As is typical of such cases, the molecule has a plane of symmetry in the ground state but the symmetry is broken in the excited state, so the ground state geometry is perturbed slightly to break symmetry at the start of the optimization. %chk=04-ac # B3LYP/6-31+G(d,p) TD=(Read,NStates=6,Root=1) SCRF=(Solvent=Ethanol) Geom=Modify Guess=Read Opt=RCFC Acetaldehyde: excited state opt Modify geometry to break Cs symmetry since first excited state is A" 0 1 4 1 2 3 10.0 5 1 2 7 -50.0 |
7楼2011-12-04 14:09:30
【答案】应助回帖
Illusionist(金币+5): 本来是左右对称的结构，但是现在HOMO和LUMO都不对称。ＨＯＭＯ只在左边，ＬＵＭＯ只在右边。即使是反转的问题，ＨＯＭＯ，ＬＵＭＯ本身也应该对称才对啊· 2011-12-04 15:06:33
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既然是对称结构，那么在左边和在右边应该是没啥分别的吧。 你这种情况是因为Gaussian 09在有的优化过程中会把整个分子翻转180度造成的，在最新的C01版本中不再存在这个问题。具体可以查看C01的Release Notes。 http://www.gaussian.com/g_tech/rel_notes.pdf |
8楼2011-12-04 14:25:56
9楼2011-12-04 14:31:58
Jasminer
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10楼2011-12-04 15:28:51
