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yaohua009

木虫 (著名写手)

[交流] 【求助】autodock的prepare_ligand4.py如何用? 已有1人参与

prepare_ligand4.py 这个脚本可以转换mol2 和pdb成pdbqt, 但怎么都搞不定,下面是我具体的操作,请高手指点:
在cygwin输入:
$ /MGLToolsPckgs/AutoDockTools/Utilities24/prepare_ligand4.py -l zinc_5759399.mol2
Traceback (most recent call last):
  File "/MGLToolsPckgs/AutoDockTools/Utilities24/prepare_ligand4.py", line 9, in
    from MolKit import Read
ImportError: No module named MolKit
提示好象没有模块,我用vi把[MolKit(line 9)删除后,又删除(line 11),均是整行删除]重新运行,又出现如下提示:
Traceback (most recent call last):
  File "./prepare_ligand4.py", line 147, in
    mols = Read(ligand_filename)
NameError: name 'Read' is not defined
不胜其烦,不知如何搞定它,哪位知道,

我装的是Python25;{“C:\Python25\Lib\site-packages”内}没有MolKit模块!

请多指教,先谢了!
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yaohua009

木虫 (著名写手)

我在别的国外论坛求助的回复如下:
“I had the same problem (MolKit not found). I believe you need to set the python path before running this script. It worked for me after setting up the path.”

谁知道如何设置这个变量:“set the python path ”?
2楼2010-07-29 20:27:36
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