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licaiqin

铜虫 (小有名气)

[交流] 【求助】pdb文件处理

我读入一个PDB文件 提示下面:
loading PDB file: ./1MHY.pdb
(starting new molecule for chain B)
(starting new molecule for chain D)
(starting new molecule for chain G)
Unknown residue: FE   number: 1060   type: Terminal/beginning
..relaxing end constraints to try for a dbase match
  -no luck
Unknown residue: FE   number: 1061   type: Terminal/last
..relaxing end constraints to try for a dbase match
  -no luck
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
  Added missing heavy atom: .R.A
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
Created a new atom named: HD1 within residue: .R
  Added missing heavy atom: .R.A
Creating new UNIT for residue: FE sequence: 1071
Created a new atom named: FE within residue: .R
Creating new UNIT for residue: FE sequence: 1072
Created a new atom named: FE within residue: .R
  total atoms in file: 12729
  Leap added 6375 missing atoms according to residue templates:
       2 Heavy
       6373 H / lone pairs
  The file contained 34 atoms not in residue templates
怎么对这个pdb文件处理呢?
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