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dreamlike

新虫 (小有名气)

应助: 0 (幼儿园)
金币: 1618
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帖子: 273
在线: 7.4小时
虫号: 5000673
注册: 2016-09-10
专业: 微生物学

[求助] 有用过BPROM预测启动子的小伙伴吗

有用过BPROM预测原核生物启动子的小伙伴吗？预测结果看不懂啊，预测应该放多少bp的碱基进行预测呢，还要这个预测结果什么意思

Length of sequence-    315
Threshold for promoters -  0.20
Number of predicted promoters -    1
Promoter Pos: 108 LDF- 14.49
-10 box at pos.    93 GTCTAGTA> Score 47
-35 box at pos.    76 TTGCAG Score 49

Oligonucleotides from known TF binding sites:

For promoter at 108:
   rpoD17:  ATTTTGTA at position    51 Score - 9
   rpoD15:  TTTTGTAA at position    52 Score -  11
      tus:  TAGTATGT at position    96 Score -  16
   rpoH2:  TTTTTTTT at position    103 Score -  16
   rpoH2:  TTTTTTTT at position    104 Score -  16
   rpoH2:  TTTTTTTT at position    105 Score -  16
   rpoH2:  TTTTTTTT at position    106 Score -  16
   rpoH2:  TTTTTTTT at position    107 Score -  16
   rpoH2:  TTTTTTTT at position    108 Score -  16
   rpoH2:  TTTTTTTT at position    109 Score -  16
   rpoH2:  TTTTTTTT at position    110 Score -  16

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