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yalefield

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老汉一枚

[交流] 【分享】QSAR竞赛:预测环境毒性(德国)

Environmental Toxicity Prediction Challenge

This challenge is organized by ICANN'09: International Conference on Artificial Neural  Networks, European Neural Network Society (ENNS) and CADASTER project.

Goals of this study:
Develop in silico models to predict environmental toxicity of molecules against T. pyriformis using data from [1].  Estimate the prediction intervals for new compounds. Further information can be found at http://www.cadaster.eu.

Five datasets of descriptors are available:
Quantum Chemistry, E-state, DRAGON, SimulationsPlus and MOE descriptors

Important key dates
August 31 The submission of results is closed.
September 14-17 2009 The winner will be announced at the ICANN'09 conference
(there is no requirement to participate to this conference)

The winner will be identified according to the criteria defined below. It is expected that the winner as well as other participants will submit articles describing their ethodological approaches  for publication in a peer-reviewed journal (under discussion).

Criteria for success
Firstly, methods with Root Mean Squared Error (RMSE) non-significantly  different to the method with lowest RMSE (according to the bootstrap test,  p<0.05) will be identified as the first-pass winners.
Secondly, the method providing the best likelihood criteria between estimated and
observed confidences for the blind test set as described in [2] will be identified amid the first-pass winners.

Igor V. Tetko, Terry W. Schultz and Wlodzislaw Duch

[1] Zhu, H.; Tropsha, A.; Fourches, D.; Varnek, A.; Papa, E.; Gramatica, P.; Oberg, T.; Dao, P.; Cherkasov, A.; Tetko, I. V.
Combinatorial QSAR Modeling of Chemical Toxicants Tested against Tetrahymena pyriformis
J. Chem. Inf. Model. 2008, 48 (4), 766-784.

[2] Tetko, I. V.; Sushko, I.; Pandey, A. K.; Zhu, H.; Tropsha, A.; Papa, E.; Oberg, T.; Todeschini, R.; Fourches, D.; Varnek, A.,
Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis:  focusing on applicability domain and overfitting by variable selection
J. Chem. Inf. Model. 2008, 48 (9), 1733-46.


Dr. Igor V. Tetko
Institute of Bioinformatics and Systems Biology
Helmholtz Zentrum Muenchen
German Research Center for Environmental Health
Ingolstaedter Landstrasse 1,
D-85764 Neuherberg, Germany

Tel./Fax: +49-89-3187-3575/x85
e-mail: itetko---vcclab.org, itetko---gmail.com

http://www.vcclab.org
http://www.cadaster.eu -- see prediction challenge!

[ Last edited by lei0736 on 2009-11-24 at 21:10 ]
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yelverxm

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小木虫(金币+0.5):给个红包,谢谢回帖交流
去年水溶性,今年来个毒性,估计我们组不会参加了
In God we trust
2楼2009-07-25 10:00:32
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yalefield

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引用回帖:
Originally posted by yelverxm at 2009-7-25 10:00:
去年水溶性,今年来个毒性,估计我们组不会参加了

打酱油,看热闹;
俯卧撑,走逍遥。
贾君鹏,吃饭咯!
3楼2009-07-25 10:02:48
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tjegg

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这个东西,小玩怡情,大玩伤身。
除了你的亲人,没有人应该对你好,对你好的人,一定要珍惜。
4楼2009-07-25 13:59:18
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whitewatercn

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小木虫(金币+0.5):给个红包,谢谢回帖交流
竞赛年年有,看看热闹吧。

要玩就玩个大的:
百万美元巨奖的Netflix比赛历时三年,终于在最近几天决出了最后的结果。http://www.netflixprize.com//leaderboard


BellKor's Pragmatic Chaos 在六月份率先达到10%的改进率,百万美元眼看就要到手!在30天的公示期内,第二名和第三名联合组成”The Ensemble “,于最后一天提交了比BellKor's Pragmatic Chaos更好的结果。很有戏剧性啊

不管是BellKor's Pragmatic Chaos ,还是 The Ensemble ,都是由多个团队联合起来的。

[ Last edited by whitewatercn on 2009-7-27 at 09:24 ]
5楼2009-07-27 09:11:54
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yalefield

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老汉一枚

引用回帖:
Originally posted by whitewatercn at 2009-7-27 09:11:
竞赛年年有,看看热闹吧。

要玩就玩个大的:
百万美元巨奖的Netflix比赛历时三年,终于在最近几天决出了最后的结果。http://www.netflixprize.com//leaderboard


BellKor's Pragmatic Chaos 在 ...

组团忽悠
三国演义
6楼2009-07-27 09:58:20
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