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1142288622

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[求助] 分段设计SSR引物

玉米基因br2的DNA  ORIGIN      
        1 gctctgccac tctgctgagg tggggggaga ggagctcccc ctccctcctc tcccctcctc
       61 gccatgtcta gcagcgaccc ggaggagatc agggcgcgcg tcgtcgttct cggttcgccc
      121 catgccgacg gcggcgacga gtgggcccgg cccgagctcg aggccttcca tctgccgtct
      181 cccgcccacc agcctcctgg cttcctagcc gggcaaccgg aagcagcaga gcaacccacg
      241 ctccctgctc ctgctggccg cagcagcagc agcagcaaca cgcctactac atctgccggt
      301 ggcggcgctg ctcctcctcc tccttcttcg cctccccctc cgccggcttc tctggagacc
      361 gagcagccgc ccaatgccag gccagcctcc gccggcgcca atgacagcaa gaagcccacc
      421 ccgcccgccg ccctgcgcga cctcttccgc ttcgccgacg gcctcgactg cgcgctcatg
      481 ctcatcggca ccctcggcgc gctcgtccac gggtgctcgc tccccgtctt cctccgcttc
      541 ttcgccgacc tcgtcgactc cttcggctcc cacgccgacg acccggacac catggtccgc
      601 ctcgtcgtca agtacgcctt ctacttcctc gtcgtcggag cggcaatctg ggcatcctcg
      661 tgggcaggta cgctatccct cctcctcctg ccgccccagc ttgtgtgcgt cgcgaattgg
      721 cggtcaattt ggattggatg acaaatcacg tcggtcagcc aatcgccgtg gctacaaacg
      781 agatgttcaa atcgttcgcc ccgctcgcaa gagatctctt gctggatgtg gaccggcgag
      841 cggcagtcga cgcggatgcg gattcggtac ctggacgcgg cgctgcggca ggacgtgtcc
      901 ttcttcgaca ccgacgtgcg ggcctcggac gtgatctacg ccatcaacgc ggacgccgtg
      961 gtggtgcagg acgccatcag ccagaaactg ggcaacctca tccactacat ggccaccttc
     1021 gtggccggct tcgtcgtggg gttcacggcc gcgtggcagc tggcgctggt cacgctggcc
     1081 gtggtgccgc tcatcgccgt catcggcggg ctgagcgccg ccgcgctcgc caagctctcg
     1141 tcccgcagcc aggacgcgct ctcgggcgcc agcggcatcg cggagcaggc gctcgcgcag
     1201 atacggatcg tgcaggcgtt cgttggcgag gagcgcgaga tgcgggccta ctcggcggcg
     1261 ctggccgtgg cgcagaggat cggctaccgc agcggcttcg ccaaggggct cggcctcggc
     1321 ggcacctact tcaccgtctt ctgctgctac gggctcctgc tctggtacgg cggccacctc
     1381 gtgcgcgccc agcacaccaa cggcgggctc gccatcgcca ccatgttctc cgtcatgatc
     1441 ggcggactgt aaggcccacc acaccacgca ctctctcctt ctgctgtcct cggccgcccc
     1501 cgtcgtcatt gctgctgacg gtatctgtgg atcgcgtgca ggcctcggca gtcggcgccg
     1561 agcatggccg cgttcgccaa ggcgcgtgtg gcggctgcca agatcttccg catcatcgac
     1621 cacaggccgg gcatctcctc gcgcgacggc gcggagccag agtcggtgac ggggcgggtg
     1681 gagatgcggg gcgtggactt cgcgtacccg tcgcggccgg acgtccccat cctgcgcggc
     1741 ttctcgctga gcgtgcccgc cgggaagacc atcgcgctgg tgggcagctc cggctccggg
     1801 aagagcacgg tggtgtcgct catcgagaga ttctacgacc ccagcgcagg tatacctagt
     1861 actgttacta cttttagcgc attaatctga ggatgtccag ttcgcttgct tgccaatcgc
     1921 cattgccatc gcaacaacaa tacttcgcca actgccattg ctgggtagat tagtacagta
     1981 gcagttagaa gaagcctcca ctgtacattg cattgccaaa caaaagtgaa ttgtgcagta
     2041 actctgtacc accacattga catggaaatg aagtgaatgc ttggagcatg cagagctggc
     2101 cggcctcatg ggctgctgct acctgctagc tagccaacca gaaccagcca tcctctttct
     2161 tgcttttctt tttactttct ttggtcgtgg ctgtttgtgg tcatacatac attcacgcag
     2221 agcagaagag ctagctaagc taggtgggtg tgcctgcaac gcgggacaaa gaaaactatt
     2281 tgttgcctgg caagatgcta ctgttgccta gcacatgcct gccattgacc gactgctcag
     2341 tgagaagtgg ttcagttgtg ctgttgacag tatagataga tatatatagt agccctgtag
     2401 attttttttt cagacaaaaa aagaagaaga acgagatgaa gtctgcaatt cggttttggc
     2461 agggcaaatc ctgctggacg ggcacgacct caggtcgctg gagctgcggt ggctgcggcg
     2521 gcagatcggg ctggtgagcc aggagccggc gctgttcgcg acgagcatca gggagaacct
     2581 gctgctgggg cgggacagcc agagcgcgac gctggcggag atggaggagg cggccagggt
     2641 ggccaacgcc cactccttca tcatcaaact ccccgacggc tacgacacgc aggtccgtcc
     2701 cgtatagcta gctcactagc tgcactgcca cttctctcgc ttgctccccc accgttgctg
     2761 cctgttgctc tccaatccac ttgtcggtgt ctggaccaca cgtgctgctt gcctagctgc
     2821 tccacatctg ctttccctgt ccaaccttat gcaactcact ctaatactat atcaaataca
     2881 tttctagagt ttaaagctta tcttagaata aatgcatctt tagctacgag acaacctaac
     2941 ttcagttgtt gttgttgttt tttttacttt ctctcttctc acaaatacta tgattacgtc
     3001 tttacagcga tcttttttat tccaaaccta aaaatgcatg cactcactct aaaagcgcaa
     3061 agggagcatc tttttttccc ccatcatctg cacgcagcct tttcttttcc tcatgtcacg
     3121 aagggactga aggtgtgtat gcagcgtcaa gtcatccatc cgttccactc cactcactca
     3181 tgcgtcgcgc actctgcgct cgtgcctgcc cggggctaaa gctttagtag ctagcctcag
     3241 atcagatact gttcgtgttt gttaggccgc ggcagctgca catgagctca tgacagccgg
     3301 cagcaccacc accaacgcca tggaagaggg gtcggggtcc atcacataga cataatgcct
     3361 gttgtagact aggacgggag ggcaattgtt aggcgcctgt tgccatcgca tttgctgctg
     3421 tgggttgcca acaagtaaca tgccaggatg ctttgctatc acgcacagga caggagaggt
     3481 cctttttctc gacacaagct ctacagcctc tactaaacta gcacttgctg atgagtgcag
     3541 aggatgaatg gacgatgaac atctagagtg agagagaaaa aaatgttaat aataataaaa
     3601 agtagtagca ggattaagaa tcaacctggg gtacgtagga agaggtacaa tccctaggaa
     3661 tctagagtat gagaagtatg ggaggagttg ggggagtgaa acggaacaaa ttccgagttg
     3721 gtattttgtc gggaatgtca agttgatttt tgatcctagt gcaagcaaga attatcaatc
     3781 actcagactc agcctgtctg tgtctgtcca ccccagctct tgctactcta cttactactg
     3841 tgctactagt gggtagggta ggtatcttac ataaactgtt attataaact gtcatctgag
     3901 aaagagagcc agtcaaaccc atgctgctgc ttattttaat cactgtcaaa tggcaggcag
     3961 gcaggcagtc tggttagtta ataacatctg ggaagggttt aatcaaacca aatcaaatca
     4021 gacgaaatct agaggccaca tgggatgggg ccatatgtac tgtactagca taactagcgg
     4081 ctagatttta ttagaacacg gactcacact cccataacta taactgactt gatcatgatt
     4141 ccttgccaag caatgctcgc atgcccatgc atgcatcatc cctggtcaaa ctcaaacact
     4201 ctccaccgtc agggaataag acttattatt ttattaacaa ttcaattttt atttattaat
     4261 tacgtctgga cgaggagtac tggtttattt gatgagagac atggcagtcc aagtcaaact
     4321 cgtttgtctg accatggcgg tgatggccgg tgcaggttgg ggagcgcggc ctgcagctct
     4381 ccggtgggca gaagcagcgc atcgccatcg cccgcgccat gctcaagaac cccgccatcc
     4441 tgctgctgga cgaggccacc agcgcgctgg actccgagtc tgagaagctc gtgcaggagg
     4501 cgctggaccg cttcatgatg gggcgcacca cccttggtga tcgcgcaaca ggctgtccac
     4561 catccgcaaa ggccgacgtg gtggccgtgc tgcagggcgg cgccgtctcc gagatgagcg
     4621 cgcacgacga gctgatggcc aagggcgaga acggcaccta cgccaagctc atccgcatgc
     4681 aggagcaggc gcacgaggcg gcgctcgtca acgcccgccg cagcagcgcc aggccctcca
     4741 gcgcccgcaa ctccgtcagc tcgcccatca tgacgcgcaa ctcctcctac ggccgctccc
     4801 cctactcccg ccgcctctcc gacttctcca cctccgactt caccctctcc atccacgacc
     4861 cgcaccacca ccaccggacc atggcggaca agcagctggc gttccgcgcc ggcgccagct
     4921 ccttcctgcg cctcgccagg atgaactcgc ccgagtgggc ctacgcgctc gccggctcca
     4981 tcggctccat ggtctgcggc tccttcagcg ccatcttcgc ctacatcctc agcgccgtgc
     5041 tcagcgtcta ctacgcgccg gacccgcggt acatgaagcg cgagatcgca aaatactgtt
     5101 acctgctcat cggcatgtcc tccgcggcgc tgctgttcaa cacggtgcag cacgtgttct
     5161 gggacacggt gggcgagaac ttgaccaagc gggtgcgcga gaagatgttc gccgccgtgt
     5221 tccgcaacga gatcgcctgg ttcgacgcgg acgagaacgc cagcgcgcgc gtgaccgcca
     5281 ggctagcgct ggacgcccag aacgtgcgct ccgccatcgg ggaccgcatc tccgtcatcg
     5341 tccagaactc ggcgctgatg ctggtggcct gcaccgcggg gttcgtcctc cagtggcgcc
     5401 tcgcgctcgt gctcctcgcc gtgttcccgc tcgtcgtggg cgccaccgtg ctgcagaaga
     5461 tgttcatgaa gggcttctcg ggggacctgg aggccgcgca cgccagggcc acgcagatcg
     5521 cgggcgaggc cgtggccaac ctgcgcaccg tggccgcgtt caacgcggag cgcaagatca
     5581 cggggctgtt cgaggccaac ctgcgcggcc cgctccggcg ctgcttctgg aaggggcaga
     5641 tcgccggcag cggctacggc gtggcgcagt tcctgctgta cgcgtcctac gcgctggggc
     5701 tgtggtacgc ggcgtggctg gtgaagcacg gcgtgtccga cttctcgcgc accatccgcg
     5761 tgttcatggt gctgatggtg tccgcgaacg gcgccgccga gacgctgacg ctggcgccgg
     5821 acttcatcaa aggcgggcgc gcgatgcggt cggtgttcga gacaatcgac cgcaagacgg
     5881 aggtggagcc ccacgacgtg gacgcggcgc cggtgccgga cggcccaggg gcgaaggtgg
     5941 aacttaagca cgtggacttt ttgtacccgt cgcggccgga catccaagtg ttccgcgacc
     6001 tgagcctccg tgcgcgcgcc ggaaaaacgt tggcgctggt ggggccgagc gggtccggca
     6061 agagctcggt cctggctctg gtgcagcggt tctacaagcc cacgtccggg cgcgtgctct
     6121 tggacggcaa ggacgtgcgc aagtacaacc tgcgggcgct gcggcgcgtg gtggcggtgg
     6181 taccgcagga gccgttcctg ttcgcggcga gcatccacga gaacatcgcg tacgggcgcg
     6241 agggcgcgac ggaggcggag gtggtggagg cggcggcgca ggcgaacgcg caccggttca
     6301 tcgcggcgct gccggagggg taccggacgc aggtgggcga gcgcggggtg cagctgtcgg
     6361 gggggcagcg gcagcggatc gcgatcgcgc gcgcgctggt gaagcaggcg gccatcgtgc
     6421 tgctggacga ggcgaccagc gcgctggacg ccgagtcgga gcggtgcgtg caggaggcgc
     6481 tggagcgcgc ggggtccggg cgcaccacca tcgtggtggc gcaccggctg gccacggtgc
     6541 gcggcgcgca caccatcgcg gtcatcgacg acggcaaggt ggcggagcag gggtcgcact
     6601 cgcacctgct caagcaccat cccgacgggt gctacgcgcg gatgctgcag cttgcagcgg
     6661 ctgacgggcg cggcggccgg gcccgggccg tcgtcctcgt gcaacggggc cgcgtaggac
     6721 ggaatggatg gatggatggg tttggttcct cgagagattg atgggtgagg aagctgaagc
     6781 tccggatcaa atggtggtac tccatgatcg caacaatgag gggaaaaaag gaaaggagaa
     6841 aatacggtgg ttcatatgat tgtacaattt gacgatctgt ttgagtcggg gttttaggat
     6901 gatgtaaacc ttcactcgcc ttttttttac tcttgtttct catccgcatc agtatcatct
     6961 atctacatac agtgtcagag atgggaactg atcccgcatc atcatctacc tcccaaggca
     7021 ccccagattg tattaatgta cttagttagc ctgttttata tatacttata agtaccaaat
     7081 agcagaattt tactccttat ctgcagtagc acgaaagaaa aaaaaaaaaa gctaaacct
其 mRNA      join(<64..667,812..1448,1542..1849,2463..2692,4356..>6761)
                     /gene="pgp1"
                     /product="PGP1"
分为8段设计SSR引物,覆盖该基因的5个外显子所有位置并相互重叠
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jinkairui123

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表示有点难度!
武汉金开瑞生物,提供核酸和蛋白的整体研究方案
2楼2017-09-12 15:02:53
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1142288622

新虫 (初入文坛)

引用回帖:
2楼: Originally posted by jinkairui123 at 2017-09-12 15:02:53
表示有点难度!

分段设计引物扩增全长而已,最后拼接分段序列
3楼2017-09-12 22:07:42
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