24小时热门版块排行榜    

查看: 1219  |  回复: 1

徐经纬

新虫 (初入文坛)

[求助] gromacs DPPC实例中不会建confout.gro文件 已有1人参与

我在“Pack the lipids around the protein”那步,能量最小化的时候看不懂。

Note how many lipids were deleted and update the [ molecules ] directive of your topology accordingly. Run energy minimization. Then, scale down the lipids by a factor of 0.95 (assuming you have used default names, the result of the minimization is called "confout.gro"

perl inflategro.pl confout.gro 0.95 DPPC 0 system_shrink1.gro 5 area_shrink1.dat

我不知道上面说的记录脂质分子减少怎么记录,又要在哪个文件下更新这些数据?

还有要怎么样能量最小化,才能产生confout.gro文件。
回复此楼
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖

茜茜小虫

新虫 (初入文坛)

【答案】应助回帖

您现在解决问题了吗???我也是遇到同样的问题!!!
2楼2017-12-12 01:51:08
已阅   回复此楼   关注TA 给TA发消息 送TA红花 TA的回帖
相关版块跳转 我要订阅楼主 徐经纬 的主题更新
最具人气热帖推荐 [查看全部] 作者 回/看 最后发表
[考研] 售SCI一区文章,我:8O5.5.1.O5.4,科目全,可伽急 +3 0pYnUiPDfdnk 2026-09-14 3/150 2026-09-15 19:35 by CgyNCDVNhGVg
[博后之家] 售SCI一区T0P文章,我:8O.55.1.O.54,科目全,可伽急 +3 40ms4Wlo4umh 2026-09-14 3/150 2026-09-15 19:23 by CgyNCDVNhGVg
[硕博家园] 售SCI一区文章,我:8.O.55.1.O.54,科目齐全,可伽急 +3 40ms4Wlo4umh 2026-09-14 3/150 2026-09-15 18:59 by CgyNCDVNhGVg
[找工作] 售SCI一区文章,我:8.O.55.1.O.54,科目齐全,可伽急 +3 23jxep3nCNZb 2026-09-14 3/150 2026-09-15 18:47 by CgyNCDVNhGVg
[考博] 售SCI一区T0P文章,我:8.O.55.1.O.5.4,科目全,可+急 +3 6F5UbRU2I5hL 2026-09-14 3/150 2026-09-15 17:39 by CgyNCDVNhGVg
[考研] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +3 6F5UbRU2I5hL 2026-09-14 3/150 2026-09-15 17:15 by CgyNCDVNhGVg
[博后之家] 售SCI文章,我:8O5.5.1.O.54,科目齐全,可+急 +3 s3fFTmArrBt6 2026-09-14 5/250 2026-09-15 16:50 by CgyNCDVNhGVg
[找工作] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +4 s3fFTmArrBt6 2026-09-14 5/250 2026-09-15 16:39 by CgyNCDVNhGVg
[考研] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +6 3n8v2C8RimXI 2026-09-13 7/350 2026-09-15 14:49 by VMDqgnlKimtZ
[公派出国] 售SCI一区T0P文章,我:8.O55.1.O.54,科目全,可十急 +7 QUjhNVAcOSff 2026-09-13 9/450 2026-09-15 14:10 by VMDqgnlKimtZ
[硕博家园] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +3 23jxep3nCNZb 2026-09-14 3/150 2026-09-15 09:38 by VMDqgnlKimtZ
[教师之家] 售SCI-T0P文章,我:8O.5.5.1.O.54,科目齐全,可+急 +3 6F5UbRU2I5hL 2026-09-14 3/150 2026-09-15 08:26 by C79jjtjAKjEn
[教师之家] 售SCI文章,我:8O.5.5.1O.54,科目全,可十急 +3 6F5UbRU2I5hL 2026-09-14 3/150 2026-09-15 08:14 by C79jjtjAKjEn
[教师之家] 售SCI一区T0P文章,我:8O.55.1.O.54,科目全,可伽急 +4 6F5UbRU2I5hL 2026-09-14 4/200 2026-09-15 07:50 by C79jjtjAKjEn
[公派出国] 售SCI文章,我:8O.5.5.1O.54,科目全,可十急 +3 s3fFTmArrBt6 2026-09-13 5/250 2026-09-15 06:38 by 5BDX0d0WFp7t
[找工作] 售SCI一区T0P文章,我:8.O.55.1.O54,科目全,可伽急 +3 3n8v2C8RimXI 2026-09-13 4/200 2026-09-15 06:01 by 5BDX0d0WFp7t
[博后之家] 售SCI一区文章,我:8O5.5.1.O5.4,科目全,可伽急 +3 s3fFTmArrBt6 2026-09-13 4/200 2026-09-14 23:24 by vZfe6xYu34yj
[博后之家] 售SCI一区T0P文章,我:8.O.55.1.O.5.4,科目全,可+急 +4 QUjhNVAcOSff 2026-09-13 4/200 2026-09-14 21:37 by vZfe6xYu34yj
[基金申请] 求教各位大神:2026教育部人文社科青年基金项目何时公示呀? +5 云宴山人 2026-09-10 7/350 2026-09-14 12:11 by ecnu2013
[考博] 27秋季材料博士申请求助 10+3 Cahal1 2026-09-11 4/200 2026-09-14 08:50 by 北京莱茵编辑
信息提示
请填处理意见